2020

Maser, A.; Peebo, K.; Vilu, R.; Nahku, R. (2020). Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rate. Research in Microbiology, 171 (5-6), 185−193. 10.1016/j.resmic.2020.02.001

Arju, G.; Taivosalo, A.; Pismennoi, D.; Lints, T.; Vilu, R.; Daneberga, Z.; Vorslova, S.; Renkonen, R.; Joenvaara, S. (2020). Application of the UHPLC-DIA-HRMS Method for Determination of Cheese Peptides. Foods, 9 (8), #979. 10.3390/foods9080979

Karron, E.; Runno-Paurson, E.; Lõiveke, H.; Islamov, B.; Kütt, M.-L.; Talve, T.; Lauringson, E.; Hõrak, H.; Edesi, E.; Niinemets, Ü. (2020). Application of widely used fungicides does not necessarily affect grain yield, and incidence of Fusarium spp. and mycotoxins DON, HT-2 and T-2 in spring barley in northern climates. KVASNY PRUMYSL, 66 (1), 215−223. 10.18832/kp2020.66.215

Witter, Steffi; Arju, Georg; Junusova, Marina; Kuhtinskaja, Maria; Samoson, Ago; Witter, Raiker; Vilu, Raivo (2020). Compound’s Pre-Screening of Withania somnifera, Baccopa monnieri and Centella asiatica Extracts. Journal of Biosciences and Medicines, 8 (9), 80−98. 10.4236/jbm.2020.89007

Kirsipuu, T.; Zadorožnaja, A.; Smirnova, J.; Friedemann, M.; Plitz, T.; Tõugu, V.; Palumaa, P. (2020). Copper(II)-binding equilibria in human blood. Scientific Reports, 10 (1), #5686. 10.1038/s41598-020-62560-4

Jõers, Arvi; Liske, Eliis; Tenson, Tanel (2020). Dividing subpopulation of Escherichia coli in stationary phase. Research in Microbiology, 171 (3-4), 153−157. 10.1016/j.resmic.2020.02.002

Kaleda, Aleksei; Talvistu, Karel; Tamm, Martti; Viirma, Maret; Rosend, Julia; Tanilas, Kristel; Kriisa, Marie; Part, Natalja; Tammik, Mari-Liis (2020). Impact of Fermentation and Phytase Treatment of Pea-Oat Protein Blend on Physicochemical, Sensory, and Nutritional Properties of Extruded Meat Analogs. Foods, 9 (8), 1059. 10.3390/foods9081059

Friedenthal, M.; Eha, K.; Kaleda, A.; Part, N.; Laos, K. (2020). Instability of low-moisture carrageenans as affected by water vapor sorption at moderate storage temperatures. SN Applied Sciences, 2, #243 . 10.1007/s42452-020-2032-9

Arike, Liisa; Seiman, Andrus; van der Post, Sjoerd; Pineiro, Ana M. Rodriguez; Ermund, Anna; Schutte, Andre; Backhed, Fredrik; Johansson, Malin E. V.; Hansson, Gunnar C. (2020). Protein Turnover in Epithelial Cells and Mucus along the Gastrointestinal Tract Is Coordinated by the Spatial Location and Microbiota. Cell Reports, 30 (4), 1077−1091. 10.1016/j.celrep.2019.12.068

Witter, S.; Samoson, A.; Vilu, R.; Witter, R. (2020). Screening of Nutraceuticals and Plant Extracts for Inhibition of Amyloid-beta Fibrillation. Journal of Alzheimer's Disease, 73 (3), 1003−1012. 10.3233/JAD-190758

Kamboj, N.; Kazantseva, J.; Rahmani, R.; Rodríguez, M. A.; Hussainova, I. (2020). Selective laser sintered bio-inspired silicon-wollastonite scaffolds for bone tissue engineering. Materials Science and Engineering C, 116, #111223. 10.1016/j.msec.2020.111223

Štšepetova, J.; Baranova, J.; Simm, J.; Parm, Ü.; Rööp, T.; Sokmann, S.; Korrovits, P.; Jaagura, M.; Rosenstein, K.; Salumets, A.; Mändar, R. (2020). The complex microbiome from native semen to embryo culture environment in human in vitro fertilization procedure. Reproductive Biology and Endocrinology, 18 (1), 1−13. 10.1186/s12958-019-0562-z

Adamberg, K.; Jaagura, M.; Aaspõllu, A.; Nurk, E.; Adamberg, S. (2020). The composition of faecal microbiota is related to the amount and variety of dietary fibres. International Journal of Food Sciences and Nutrition. 10.1080/09637486.2020.1727864

Adamberg, Kaarel; Raba, Grete; Adamberg, Signe (2020). Use of Changestat for Growth Rate Studies of Gut Microbiota. Frontiers in Bioengineering and Biotechnology, 8, ARTN 24. 10.3389/fbioe.2020.00024

Rosend, J.; Kaleda, A.; Kuldjärv, R.; Arju, G.; Nisamedtinov, I. (2020). The effect of apple juice clarification and concentration on cider fermentation and properties of the final product. Foods, 9, 1401. 10.3390/foods9101401

2019

Maser, A.; Peebo, K.; Nahku, R. (2019). Avoiding amino acid depletion in a complex medium results in improved Escherichia coli BW25113 growth. Microbiology, 165 (1), 37−46. 10.1099/mic.0.000742

Gawin, Agnieszka; Peebo, Karl; Hans, Sebastian; Ertesvag, Helga; Irla, Marta; Neubauer, Peter; Brautaset, Trygve (2019). Construction and characterization of broad-host-range reporter plasmid suitable for on-line analysis of bacterial host responses related to recombinant protein production. Microbial Cell Factories, 18, ARTN 80. 10.1186/s12934-019-1128-7

Zekker, Ivar; Kiviruut, Aimar; Rikmann, Ergo; Mandel, Anni; Jaagura, Madis; Tenno, Toomas; Artemchuk, Oleg; Rubin, Sergio dC; Tenno, Taavo (2019). Enhanced Efficiency of Nitritating-Anammox Sequencing Batch Reactor Achieved at Low Decrease Rates of Oxidation-Reduction Potential. Environmental Engineering Science, 36 (3), 350−360. 10.1089/ees.2018.0225

Mandel, A.; Zekker, I; Jaagura, M.; Tenno, T. (2019). Enhancement of anoxic phosphorus uptake of denitrifying phosphorus removal process by biomass adaption. International Journal of Environmental Science and Technology, 16 (10), 5965−5978. 10.1007/s13762-018-02194-2

Kulikouskaya, V. I.; Lazouskaya, M. E.; Agabekov, V. E. (2019). Features of the Formation of Interpolyelectrolyte Complexes Based on Chitosan and Pectin. Theoretical and Experimental Chemistry, 54 (6), 375−385. 10.1007/s11237-019-09584-8

Puntscher, Hannes; Hankele, Svenja; Tillmann, Katharina; Attakpah, Eva; Braun, Dominik; Kütt, Mary-Liis; Del Favero, Giorgia; Aichinger, Georg; Pahlke, Gudrun; Hoeger, Harald; Marko, Doris; Warth, Benedikt (2019). First insights into Alternaria multi-toxin in vivo metabolism. Toxicology Letters, 301, 168−178. 10.1016/j.toxlet.2018.10.006

Markkinen, Niko; Laaksonen, Oskar; Nahku, Ranno; Kuldjärv, Rain; Yanga, Baoru (2019). Impact of lactic acid fermentation on acids, sugars, and phenolic compounds in black chokeberry and sea buckthorn juices. Food Chemistry, 286, 204−215. 10.1016/j.foodchem.2019.01.189

Taivosalo, A.; Kriščiunaite, T.; Stulova, I.; Part, N.; Rosend, J.; Sõrmus, A.; Vilu, R. (2019). Ripening of Hard Cheese Produced from Milk Concentrated by Reverse Osmosis. Foods, 8 (5), #165. 10.3390/foods8050165

Kaleda, A.; Haleva, L.; Sarusi, G.; Pinsky, T.; Mangiagalli, M.; Bar Dolev, M.; Lotti, M.; Nardini, M.; Braslavsky, I. (2019). Saturn-shaped ice burst pattern and fast basal binding of an ice-binding protein from an Antarctic bacterial consortium. Langmuir, 35 (23), 7337−7346. 10.1021/acs.langmuir.8b01914

Rosend, J.; Kuldjärv, R.; Rosenvald, S.; Paalme, T. (2019). The effects of apple variety, ripening stage, and yeast strain on the volatile composition of apple cider. Heliyon, 5 (6), #e01953. 10.1016/j.heliyon.2019.e01953

Rosend, J.; Kuldjärv, R.; Arju, G.; Nisamedtinov, I. (2019). Yeast performance characterisation in different cider fermentation matrices. Agronomy Research, 17 (5), 2040−2053. 10.15159/AR.19.178

2018

Peebo, K.; Neubauer, P. (2018). Application of Continuous Culture Methods to Recombinant Protein Production in Microorganisms. Microorganisms, 6 (3), #56. 10.3390/microorganisms6030056

Panebianco, C.; Kelman, E.; Vene, K.; Gioffreda, D.; Tavano, F.; Vilu, R.; Terracciano, F.; Pata, I.; Adamberg, K.; Andriulli, A.; Pazienza, V. (2018). Cancer sniffer dogs: how can we translate this peculiarity in the laboratory medicine? Results of a pilot study on gastrointestinal cancers. Clinical Chemistry and Laboratory Medicine (CCLM), 56 (1), 138−146. 10.1515/cclm-2016-1158

Adamberg, Kaarel; Adamberg, Signe; Ernits, Karin; Larionova, Anneli; Voor, Tiia; Jaagura, Madis; Visnapuu, Triinu; Alamäe, Tiina (2018). Composition and metabolism of fecal microbiota from normal and overweight children are differentially affected by melibiose, raffinose and raffinose-derived fructans. Anaerobe, 52, 100−110. 10.1016/j.anaerobe.2018.06.009

Taivosalo, A.; Kriščiunaite, T.; Seiman, A.; Part, N.; Stulova, I.; Vilu, R. (2018). Comprehensive analysis of proteolysis during 8 months of ripening of high-cooked Old Saare cheese. Journal of Dairy Science, 101 (2), 944−967. 10.3168/jds.2017-12944

Aichinger, Georg; Puntscher, Hannes; Beisl, Julia; Kütt, Mary-Liis; Warth, Benedikt; Marko, Doris (2018). Delphinidin protects colon carcinoma cells against the genotoxic effects of the mycotoxin altertoxin II. Toxicology Letters, 284, 136−142. 10.1016/j.toxlet.2017.12.002

Kulikouskaya, V. I.; Lazouskaya, M. E.; Kraskouski, A. N.; Agabekov, V. E. (2018). Formation and Properties of Multilayer Films Based on Polyethyleneimine and Bovine Serum Albumin. Russian Journal of Physical Chemistry A, 92 (1), 146−152. 10.1134/S0036024418010132

Kazantseva, J.; Ivanov, R.; Gasik, M.; Neuman, T.; Hussainova, I. (2018). Graphene-Augmented Nanofiber Scaffolds Trigger Gene Expressions Switching of Four Cancer Cell Types. ACS Biomaterials Science Engineering, 4 (5), 1622−1629. 10.1021/acsbiomaterials.8b00228

Kazantseva, J.; Hussainova, I.; Ivanov, R.; Neuman, T.; Gasik, M. (2018). Hybrid graphene–ceramic nanofibre network for spontaneous neural differentiation of stem cells. Interface Focus, 8 (3), #20170037. 10.1098/rsfs.2017.0037

Lozovskaya, M. E.; Kulikovskaya, V. I.; Ignatovich, Zh. V.; Koroleva, E. V.; Agabekov, V. E. (2018). Hydrogel Nanoparticles of Chitosan-Folic-Acid Conjugate with Imatinib Methanesulfonate. Pharmaceutical Chemistry Journal, 52 (2), 127−132. 10.1007/s11094-018-1777-6

Kaleda, A.; Tsanev, R.; Klesment, T.; Vilu, R.; Laos, K. (2018). Ice cream structure modification by ice-binding proteins. Food Chemistry, 246, 164−171. 10.1016/j.foodchem.2017.10.152

Panebianco, C.; Adamberg, K.; Jaagura, M.; Copetti, M.; Fontana, A.; Adamberg, S.; Kolk, K.; Vilu, R.; Andriulli, A.; Pazienza, V. (2018). Influence of gemcitabine chemotherapy on the microbiota of pancreatic cancer xenografted mice. Cancer Chemotherapy and Pharmacology, 81 (4), 773−782. 10.1007/s00280-018-3549-0

Stalidzans, Egils; Seiman, Andrus; Peebo, Karl; Komasilovs, Vitalijs; Pentjuss, Agris (2018). Model-based metabolism design: constraints for kinetic and stoichiometric models. Biochemical Society Transactions, 46 (2), 261−267. 10.1042/BST20170263

Sadam, Helle; Pihlak, Arno; Kivil, Anri; Pihelgas, Susan; Jaago, Mariliis; Adler, Priit; Vilo, Jaak; Vapalahti, Olli; Neuman, Toomas; Lindholm, Dan; Partinen, Markku; Vaheri, Antti; Palm, Kaia (2018). Prostaglandin D2 Receptor DP1 Antibodies Predict Vaccine-induced and Spontaneous Narcolepsy Type 1: Large-scale Study of Antibody Profiling. EBioMedicine, 29, 47−59. 10.1016/j.ebiom.2018.01.043

Del Favero, Giorgia; Woelflingseder, Lydia; Braun, Dominik; Puntscher, Hannes; Kütt, Mary-Liis; Dellafiora, Luca; Warth, Benedikt; Pahlke, Gudrun; Dall'Asta, Chiara; Adam, Gerhard; Marko, Doris (2018). Response of intestinal HT-29 cells to the trichothecene mycotoxin deoxynivalenol and its sulfated conjugates. Toxicology Letters, 295, 424−437. 10.1016/j.toxlet.2018.07.007

Kortesniemi, M.; Rosenvald, S.; Laaksonen, O.; Vanag, A.; Ollikka, T.; Vene, K.; Yang, B. (2018). Sensory and chemical profiles of Finnish honeys of different botanical origins and consumer preferences. Food Chemistry, 246, 351−359. 10.1016/j.foodchem.2017.10.069

Mangiagalli, M.; Sarusi, G.; Kaleda, A.; Bar Dolev, M.; Nardone, V.; Vena, V. F.; Braslavsky, I.; Lotti, M.; Nardini, M. (2018). Structure of a bacterial Ice Binding Protein with two faces of interaction with ice. FEBS Journal, 285, 1653−1666. 10.1111/febs.14434

Adamberg, K; Kolk, K; Jaagura, M; Vilu, R; Adamberg, S (2018). The composition and metabolism of faecal microbiota is specifically modulated by different dietary polysaccharides and mucin: an isothermal microcalorimetry study. Beneficial Microbes, 9 (1), 21−34. 10.3920/BM2016.0198

Puntscher, Hannes; Kütt, Mary-Liis; Skrinjar, Philipp; Mikula, Hannes; Podlech, Joachim; Fröhlich, Johannes; Marko, Doris; Warth, Benedikt (2018). Tracking emerging mycotoxins in food: development of an LC-MS/MS method for free and modified Alternaria toxins. Analytical and Bioanalytical Chemistry, 410 (18), 4481−4494. 10.1007/s00216-018-1105-8

2017

Paalme, T.; Vilbaste, A.; Kevvai, K.; Nisamedtinov, I.; Tanilas, K. (2017). Assessment of bioavailable B vitamin content in food using in vitro digestibility assay and LC-MS SIDA. Analytical and Bioanalytical Chemistry, 1−10. 10.1007/s00216-017-0592-3

Tripathi, V.; Edrisi, S. A.; Chen, B.; Gupta, V. K.; Vilu, R.; Gathergood, N.; Abhilash, P. C. (2017). Biotechnological Advances for Restoring Degraded Land for Sustainable Development. Trends in Biotechnology, 35 (9), 847−859. 10.1016/j.tibtech.2017.05.001

Mangiagalli, M.; Bar-Dolev, M.; Tedesco, P.; Natalello, A.; Kaleda, A.; Brocca, S.; de Pascale, D.; Pucciarelli, S.; Miceli, C.; Braslavsky, I.; Lotti, M. (2017). Cryo-protective effect of an ice-binding protein derived from Antarctic bacteria. FEBS Journal, 284 (1), 163−177. 10.1111/febs.13965

Panebianco, C.; Adamberg, K.; Adamberg, S.; Saracino, C.; Jaagura, M.; Kolk, K.; Di Chio, A. G.; Graziano, P.; Vilu, R.; Pazienza, V. (2017). Engineered Resistant-Starch (ERS) Diet Shapes Colon Microbiota Profile in Parallel with the Retardation of Tumor Growth in In Vitro and In Vivo Pancreatic Cancer Models. Nutrients, 9 (4), #331. 10.3390/nu9040331

Ruiz Rodriguez, Luciana G.; Aller, Kadri; Bru, Elena; De Vuyst, Luc; Hebert, Elvira M.; Mozzi, Fernanda (2017). Enhanced mannitol biosynthesis by the fruit origin strain Fructobacillus tropaeoli CRL 2034. Applied Microbiology and Biotechnology, 101 (15), 6165−6177. 10.1007/s00253-017-8395-1

Laaksonen, O.; Kuldjärv, R.; Paalme, T.; Mira Virkki, M.; Yang, B. (2017). Impact of apple cultivar, ripening stage, fermentation type and yeast strain on phenolic composition of apple ciders. Food Chemistry, 233, 29−37. 10.1016/j.foodchem.2017.04.067

Surženko, M.; Kontram, K.; Sarand, I. (2017). PCR–based fingerprinting and identification of contaminative fungi isolated from rye breads. Agronomy Research, 15 (1), 288−297.

Kirs, M.; Karo, E.; Lumi, P. (2017). Strategic Behaviour of Research Groups within the Entrepreneurial University Policy Rhetoric: The Estonian Biotechnology Sector. Science and Public Policy, 44 (6), 802−820. 10.1093/scipol/scx015

Akk, E., Søndergaard, T.E, Sørensen, J.L, Giese, H., Kütt, M.L., Edesi, L., Lõiveke, H. and E. Lauringson (2017). The effects of nitrogen rates and intercropping on the occurrence of Fusarium spp. on barley kernels. Agronomy Research, 15 (S2), 1267−1275.

2016

Laks, K.; Kirsipuu, T.; Dmitrijeva, T.; Salumets, A.; Palumaa, P. (2016). Assessment of Blood Contamination in Biological Fluids Using MALDI-TOF MS. The Protein Journal, 35 (3), 171−176. 10.1007/s10930-016-9657-y

Bondarenko, Olesja M; Ivask, Angela; Kahru, Anne; Vija, Heiki; Titma, Tiina; Visnapuu, Meeri; Joost, Urmas; Pudova, Ksenia; Adamberg, Signe; Visnapuu, Triinu; Alamäe, Tiina. (2016). Bacterial polysaccharide levan as stabilizing, non-toxic and functional coating material for microelement-nanoparticles. Carbohydrate Polymers, 136, 710−720. 10.1016/j.carbpol.2015.09.093

Viiard, E.; Bessmeltseva, M.; Simm, J.; Talve, T.; Aaspõllu, A; Paalme, T.; Sarand, I. (2016). Diversity and Stability of Lactic Acid Bacteria in Rye Sourdoughs of Four Bakeries with Different Propagation Parameters. PLoS ONE, 11 (2), e0148325. 10.1371/journal.pone.0148325

Kazantseva, J.; Ivanov, R.; Gasik, M.; Neuman, T.; Hussainova, I. (2016). Graphene-augmented nanofiber scaffolds demonstrate new features in cells behaviour. Scientific Reports, 6, #30150. 10.1038/srep30150

Jaagura, M.; Taal, K.; Koppel, I.; Tuvikene, J.; Timmusk, T.; Tamme, R. (2016). Rat NEURL1 3'UTR is alternatively spliced and targets mRNA to dendrites. Neuroscience Letters, 635, 71−76. 10.1016/j.neulet.2016.10.041

Kevvai, K.; Kütt, M.-L.; Nisamedtinov, I.; Paalme, T. (2016). Simultaneous utilization of ammonia, free amino acids and peptides during fermentative growth of Saccharomyces cerevisiae. Asymmetric Michael Addition of an Alanine Derivative, 122 (1), 110−115. 10.1002/jib.298

Kazantseva, J.; Sadam, H.; Neuman, T.; Palm, K. (2016). Targeted alternative splicing of TAF4: a new strategy for cell reprogramming. Scientific Reports, 6, 30852−30852. 10.1038/srep30852

Seisonen, S.; Vene, K.; Koppel, K. (2016). The current practice in the application of chemometrics for correlation of sensory and gas chromatographic data. Food Chemistry, 210 (1), 530−540. 10.1016/j.foodchem.2016.04.134

Sannik, Urmas; Pitk, Peep; Lepasalu, Lembit; Poikalainen, Väino (2016). Tool for the Assessment and Prediction of Animal By-product Resources. Waste and Biomass Valorization, 7 (2), 397−404. 10.1007/s12649-015-9447-3

Sadam, H.; Liivas, U.; Kazantseva, A.; Pruunsild, P.; Kazantseva, J.; Timmusk, T.; Neuman, T.; Palm, K. (2016). GLI2 cell-specific activity is controlled at the level of transcription and RNA processing: Consequences to cancer metastasis. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, 1862 (1), 46−55 10.1016/j.bbadis.2015.10.008

2015

Adamberg, K.; Valgepea, K.; Vilu, R. (2015). Advanced continuous cultivation methods for systems microbiology. Microbiology, 161 (9), 1707−1719. 10.1099/mic.0.000146

Sannik, Urmas; Lepasalu, Lembit; Soidla, Riina; Põldvere, Aarne; Saar, Raili; Tänavots, Alo; Poikalainen, Väino (2015). Calculation model for the assessment of animal by-product resources in Estonian meat industry. Agronomy Research, 13 (4), 1053−1063.

Seisonen, S.; Kivima, E.; Vene, K. (2015). Characterization of the aroma profile of different honeys and corresponding flowers using solid phase microextraction and gas chromatography-mass spectrometry/olfactometry. Food Chemistry, 169, 34−40. 10.1016/j.foodchem.2014.07.125

Kirsipuu, T.; Laks, K.; Velthut-Meikas, A.; Levkov, L.; Salumets, A.; Palumaa, P. (2015). Comprehensive elucidation of amino acid profile in human follicular fluid and plasma of in vitro fertilization patients. Gynecological Endocrinology, 31 (SUP1), 9−17. 10.3109/09513590.2015.1085186

Jõul, P.; Lees, H.; Vaher, M.; Kobrin, E-G.; Kaljurand, M.; Kuhtinskaja, M. (2015). Development of a capillary electrophoresis method with direct UV detection for the analysis of thiodiglycol and its oxidation products. Electrophoresis, 36, 1202−1207. 10.1002/elps.201500038

Vallner, L.; Gavrilova, O.; Vilu, R. (2015). Environmental risks and problems of the optimal management of an oil shale semi-coke and ash landfill in Kohtla-Järve, Estonia. The Science of The Total Environment, 524, 400−415. 10.1016/j.scitotenv.2015.03.130

Aller, Kadri; Adamberg, Kaarel; Reile, Indrek; Timarova, Veronica; Peebo, Karl; Vilu, Raivo (2015). Excess of threonine compared with serine promotes threonine aldolase activity in Lactococcus lactis IL1403. Microbiology, 161 (5), 1073−1080. 10.1099/mic.0.000071

Esquerre, T.; Moisan, A.; Chiapello, H.; Arike, L.; Vilu, R.; Gaspin, C.; Cocaign-Bousquet, M.; Girbal, L. (2015). Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates. BMC Genomics, 16, #275. 10.1186/s12864-015-1482-8

Yau, Johnathon; Hunt, Kaarel E.; McDougall, Laura; Kennedy, Alan R.; Nelson, David J. (2015). Half-sandwich nickel(II) complexes bearing 1,3-di(cycloalkyl)imidazol-2-ylidene ligands. Beilstein Journal of Organic Chemistry, 11, 2171−2178. 10.3762/bjoc.11.235

Kriisa, Marie; Sinijärv, Hedi; Vaasa, Angela; Enkvist, Erki; Kostenko, Sergiy; Moens, Ugo; Uri, Asko (2015). Inhibition of CREB Phosphorylation by Conjugates of Adenosine Analogues and Arginine-Rich Peptides, Inhibitors of PKA Catalytic Subunit. ChemBioChem, 16 (2), 312−319. 10.1002/cbic.201402526

Valgepea, K.; Peebo, K.; Adamberg, K.; Vilu, R. (2015). Lean-proteome strains – next step in metabolic engineering. Frontiers in Bioengineering and Biotechnology, 3, #11. 10.3389/fbioe.2015.00011

Adamberg, Kaarel; Tomson, Katrin; Talve, Tiina; Pudova, Ksenia; Puurand, Marju; Visnapuu, Triinu; Alamäe, Tiina; Adamberg, Signe (2015). Levan Enhances Associated Growth of Bacteroides, Escherichia, Streptococcus and Faecalibacterium in Fecal Microbiota. PLoS ONE, 10 (12), e0144042. 10.1371/journal.pone.0144042

Stulova, I.; Kabanova, N.; Kriščiunaite, T.; Adamberg, K.; Laht, T.-M.; Vilu, R. (2015). Microcalorimetric study of the growth of Streptococcus thermophilus in renneted milk. Frontiers in Microbiology, 6, #79. 10.3389/fmicb.2015.00079

Peebo, K.; Valgepea, K.; Maser, A.; Nahku, R.; Adamberg, K.; Vilu, R. (2015). Proteome reallocation in Escherichia coli with increasing specific growth rate. Molecular BioSystems, 11 (4), 1184−1193. 10.1039/C4MB00721B

Ahelik, Ave; Mändar, Reet; Korrovits, Paul; Karits, Peeter; Talving, Elle; Rosenstein, Karin; Jaagura, Madis; Salumets, Andres; Kullisaar, Tiiu. (2015). Systemic oxidative stress could predict assisted reproductive technique outcome. Journal of Assisted Reproduction and Genetics, 32 (5), 699−704. 10.1007/s10815-015-0466-6

Kazantseva, J.; Tints, K.; Neuman, T.; Palm, K. (2015). TAF4 controls differentiation of human neural progenitor cells through hTAF4-TAFH activity. Journal of Molecular Neuroscience, 55 (1), 160−166. 10.1007/s12031-014-0295-6

Wightman, G.; Emery, F.; Austin, C.; Andersson, I.; Harcus, L.; Arju, G.; Steven, C. (2015). The interaction of fingermark deposits on metal surfaces and potential ways for visualisation. Forensic Science International, 249, 241−254. 10.1016/j.forsciint.2015.01.035

Mazina, Olga; Allikalt, Anni; Heinloo, Annika; Reinart-Okugbeni, Reet; Kopanchuk, Sergei; Rinken, Ago (2015). cAMP Assay for GPCR Ligand Characterization: Application of BacMam Expression System. Methods in molecular biology, 1272, 65−77. 10.1007/978-1-4939-2336-6_5

2014

Põldvere, A.; Lepasalu, L.; Tänavots, A.; Olt, J.; Sannik, U.; Sats, A.; Saar, R.; Martinson, R.; Poikalainen, V. (2014). An alternative method for meat shear energy estimation during ageing. Agronomy Research, 12 (3), 793−800.

Kütt, M-L.; Stagsted, J. (2014). Caseins from bovine colostrum and milk strongly bind piscidin-1, an antimicrobial peptide from fish. International Journal of Biological Macromolecules, 70, 364−372. 10.1016/j.ijbiomac.2014.06.063

Kivima, E.; Seiman, A.; Pall, R.; Sarapuu, E.; Martverk, K.; Laos, K. (2014). Characterization of Estonian honeys by botanical origin. Proceedings of the Estonian Academy of Sciences, 63 (2), 183−192. 10.3176/proc.2014.2.08

Hälvin, K., Nisamedtinov, I., Paalme, T. (2014). Comparison of different extraction methods to determine free and bound forms of B-group vitamins in quinoa. Analytical and Bioanalytical Chemistry, 406 (28), 7355−7366. 10.1007/s00216-014-8122-z

Peebo, K.; Valgepea, K.; Nahku, R.; Riis, G.; Õun, M.; Adamberg, K.; Vilu, R. (2014). Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coli. Applied Microbiology and Biotechnology, 98 (11), 5131−5143. 10.1007/s00253-014-5613-y

Koppel, K.; Chambers, E. IV; Vázquez-Araújoa, L.; Timberg, L.; Carbonell-Barrachinad, Á. A.; Suwonsichone, S. (2014). Cross-country comparison of pomegranate juice acceptance in Estonia, Spain, Thailand, and United States. Food Quality and Preference, 31, 116−123. 10.1016/j.foodqual.2013.03.009

Adamberg, Signe; Tomson, Katrin; Vija, Heiki; Puurand, Marju; Kabanova, Natalja; Visnapuu, Triinu; Jõgi, Eerik; Alamäe, Tiina; Adamberg, Kaarel (2014). Degradation of fructans and production of propionic acid by Bacteroides thetaiotaomicron are enhanced by the shortage of amino acids. Frontiers in Nutrition, 1 (21), 1−10. 10.3389/fnut.2014.00021

Orro, Kadri; Smirnova, Olga; Arshavskaja, Jelena; Salk, Kristiina; Meikas, Anne; Pihelgas, Susan; Rumvolt, Reet; Kingo, Külli; Kazarjan, Aram; Neuman, Toomas; Spee, Pieter (2014). Development of TAP, a non-invasive test for qualitative and quantitative measurements of biomarkers from the skin surface. Biomarker Research, 2 (20), #20. 10.1186/2050-7771-2-20

Kazantseva, J.; Palm, K. (2014). Diversity in TAF proteomics: consequences for cellular differentiation and migration. International Journal of Molecular Sciences, 15 (9), 16680−16697. 10.3390/ijms150916680

Bessmeltseva, M.; Viiard, E.; Simm, J.; Paalme, T.; Sarand, I. (2014). Evolution of Bacterial Consortia in Spontaneously Started Rye Sourdoughs during Two Months of Daily Propagation. PLoS ONE, 9 (4), e95449. 10.1371/journal.pone.0095449

Kobrin, E-G.; Lees, H.; Fomitšenko, M.; Kubáň, P.; Kaljurand, M. (2014). Fingerprinting postblast explosive residues by portable capillary electrophoresis with contactless conductivity detection. Electrophoresis, 35 (8), 1165−1172. 10.1002/elps.201300380

Seras-Franzoso, J; Peebo, K; García-Fruitós, E; Vazquez, E; Rinas, U; Villaverde, A (2014). Improving protein delivery of fibroblast growth factor-2 from bacterial inclusion bodies used as cell culture substrates. Acta Biomaterialia, 10 (3), 1354−1359. 10.1016/j.actbio.2013.12.021

Pitk, P.; Kaparaju, P.; Palatsi, J.; Belen, F.; Vilu, R. (2014). Mesophilic co-digestion of dairy manure and lipid rich solid slaughterhouse wastes: process efficiency, limitations and floating granules formation. Bioresource Technology, 166, 168−177. 10.1016/j.biortech.2014.05.033

Erm, S.; Adamberg; K.; Vilu, R. (2014). Multiplying steady-state culture in multi-reactor system. Bioprocess and Biosystems Engineering, 37 (11), 2361−2370. 10.1007/s00449-014-1214-5

Aller, K.; Adamberg, K.; Timarova, V.; Seiman, A.; Feštšenko, D.; Vilu, R. (2014). Nutritional requirements and media development for Lactococcus lactis IL1403. Applied Microbiology and Biotechnology, 98 (13), 5871−5881. 10.1007/s00253-014-5641-7

Lahtvee, Petri-Jaan; Seiman, Andrus; Arike, Liisa; Adamberg, Kaarel; Vilu, Raivo (2014). Protein turnover forms one of the highest maintenance costs in Lactococcus lactis. Microbiology-SGM, 160 (7), 1501−1512. 10.1099/mic.0.078089-0

Pink, A.; Kallastu, A.; Turkina, M.; Skolnaja, M.; Kogerman, P.; Päll, T.; Valkna, A. (2014). Purification, Characterization and Plasma Half-Life of PEGylated Soluble Recombinant Non-HA-Binding CD44. BioDrugs, 28 (4), 393−402. 10.1007/s40259-014-0089-y

Timberg, L.; Koppel, K.; Kuldjärv, R.; Chambers IV, E.; Soontrunnarudrungsr, A.; Suwonsichon, S.; Paalme, T. (2014). Seasoned Sprat Products Acceptance in Estonia and in Thailand. Journal of Aquatic Food Product Technology, 23 (6), 552−566. 10.1080/10498850.2012.735748

Abner, K.; Aaviksaar, T.; Adamberg, K.; Vilu, R. (2014). Single-cell model of prokaryotic cell cycle. Journal of Theoretical Biology, 341, 78−87. 10.1016/j.jtbi.2013.09.035

Arike, Liisa; Peil, Lauri (2014). Spectral counting label-free proteomics. Methods in molecular biology (Clifton, N.J.), 1156, 213−222 10.1007/978-1-4939-0685-7_14

Timberg, L.; Koppel, K.; Kuldjärv, R.; Paalme, T. (2014). Spice-cured sprat ripening and sensory properties development. Journal of Aquatic Food Product Technology, 23 (2), 129−145. 10.1080/10498850.2012.700003

Adamberg, S.; Sumeri, I.; Uusna, R.; Ambalam, P.; Kondepudi, K. K.; Adamberg, K.; Wadström, T.; Ljungh, Å. (2014). Survival and synergistic growth of mixed cultures of bifidobacteria and lactobacilli combined with prebiotic oligosaccharides in a gastrointestinal tract simulator. Microbial Ecology in Health and Disease, 25, 1−9. 10.3402/mehd.v25.23062

Pedastsaar, P.; Vaher, M.; Helmja, K.; Kulp, M.;Kaljurand, M.; Karp, K.; Raal, A.; Karathanos, V.; Püssa, T. (2014). The Chemical Composition of Red Wines made from Hybrid Grape and Common Crape. Proceedings of the Estonian Academy of Sciences, 63 (4), 444−453.

Klesment, T.; Stekolštšikova, J.; Laos, K. (2014). The influence of guar gum/furcellaran and guar gum/carrageenan stabilizer systems on the rheological and sensorial properties of ice cream during storage. Proceedings of the Estonian Academy of Sciences, 63 (2), 193−198. 10.3176/proc.2014.2.09

Paalme, T.; Kevvai, K.; Vilbaste, A.; Haelvin, K.; Nisamedtinov, I. (2014). Uptake and accumulation of B-group vitamers in Saccharomyces cerevisiae in ethanol-stat fed-batch culture. World Journal of Microbiology and Biotechnology, 30 (9), 2351−2359. 10.1007/s11274-014-1660-x

Kevvai, K.; Kütt, M.-L.; Nisamedtinov, I.; Paalme, T. (2014). Utilization of N-15-labelled yeast hydrolysate in Lactococcus lactis IL1403 culture indicates co-consumption of peptide-bound and free amino acids with simultaneous efflux of free amino acids. Antonie van Leeuwenhoek, 105 (3), 511−522. 10.1007/s10482-013-0103-2

2013

Vene, K.; Seisonen, S.; Koppel, K.; Leitner, E.; Paalme, T. (2013). A Method for GC-Olfactometry Panel Training. Chemosensory Perception, 6 (4), 179−189. 10.1007/s12078-013-9156-x

Seras-Franzoso, J; Peebo, K; Luis Corchero, J; Tsimbouri, PM; Unzueta, U; Rinas, U; Dalby, MJ; Vazquez, E; García-Fruitós, E; Villaverde, A (2013). A nanostructured bacterial bioscaffold for the sustained bottom-up delivery of protein drugs. Nanomedicine, 8 (10), 1587−1599. 10.2217/NNM.12.188

Kazantseva, J.; Kivil, A.; Tints, K.; Kazantseva, A.; Neuman, T.; Palm, K. (2013). Alternative splicing targeting the hTAF4-TAFH domain of TAF4 represses proliferation and accelerates chondrogenic differentiation of human mesenchymal stem cells. PLoS ONE, 8 (10), e74799. 10.1371/journal.pone.0074799

Kauts, M.-L.; Pihelgas, S.; Orro, K.; Neuman, T.; Piirsoo, A. (2013). CCL5/CCR1 axis regulates multipotency of human adipose tissue derived stromal cells. Stem Cell Research, 10 (2), 166−178. 10.1016/j.scr.2012.11.004

Pitk, P.; Palatsi, J.; Affes, R.; Kaparaju, P.; Vilu, R. (2013). Co-digestion of sewage sludge and sterilized solid slaughterhouse waste: methane production efficiency and process limitations. Bioresource Technology, 134, 227−232. 10.1016/j.biortech.2013.02.029

Hälvin, K.; Paalme, T.; Nisamedtinov, I. (2013). Comparison of different extraction methods for simultaneous determination of B-complex vitamins in nutritional yeast using LC/MS-TOF and stable isotope dilution assay. Analytical and Bioanalytical Chemistry, 405 (4), 1213−1222. 10.1007/s00216-012-6538-x

Valgepea, K.; Adamberg, K.; Seiman, A.; Vilu, R. (2013). Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins. Molecular BioSystems, 9 (9), 2344−2358. 10.1039/c3mb70119k

Viiard, E.; Mihhalevski, A.; Rühka, T.; Paalme, T.; Sarand, I. (2013). Evaluation of the microbial community in industrial rye sourdough upon continuous back-slopping propagation revealed Lactobacillus helveticus as the dominant species. Journal of Applied Microbiology, 114 (2), 404−412. 10.1111/jam.12045

Stulova, I.; Kabanova, N.; Kriščiunaite, T.; Taivosalo, A.; Laht, T.-M.; Vilu, R. (2013). Fermentation of reconstituted milk by Streptococcus thermophilus: Effect of irradiation on skim milk powder. International Dairy Journal, 31 (2), 139−149. 10.1016/j.idairyj.2013.02.004

Akk, Elina; Lõiveke, Heino; Edesi, Liina; Kütt, Mary-Liis; Lauringson, Enn; Kastanje, Veiko. (2013). Formation of the abundance of microfungi on the barley grain grown as pure and mixed crops in Central and North Estonia. Estonian Journal of Ecology, 62 (4), 265−275. 10.3176/eco.2013.4.03

Pey, J.; Valgepea, K.; Rubio, A.; Beasley, J. E.; Planes, F. J. (2013). Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways. BMC Systems Biology, 7 (1), #134. 10.1186/1752-0509-7-134

Kabanova, N.; Stulova, I.; Vilu, R. (2013). Microcalorimetric study of growth of Lactococcus lactis IL1403 at low glucose concentration in liquids and solid agar gels. Thermochimica Acta, 559, 69−75. 10.1016/j.tca.2013.02.013

Mihhalevski, Anna; Nisamedtinov, Ildar; Hälvin, Kristel; Ošeka, Aleksandra; Paalme, Toomas (2013). Stability of B-complex vitamins and dietary fiber during rye sourdough bread production. Journal of Cereal Science, 57 (1), 30−38. 10.1016/j.jcs.2012.09.007

Taler-Verčič, A.; Kirsipuu, T.; Friedemann, M.; Noormägi, A.; Polajnar, M.; Smirnova, J.; Znidarič, MT.; Zganec, M.; Skarabot, M.; Vilfan, A.; Staniforth, RA.; Palumaa, P.; Zerovnik, E. (2013). The role of initial oligomers in amyloid fibril formation by human stefin B. International Journal of Molecular Sciences, 14 (9), 18362−18384. 10.3390/ijms140918362

Tatkiewicz, Witold I.; Seras-Franzoso, Joaquin; Garcia-Fruitos, Elena; Vazquez, Esther; Ventosa, Nora; Peebo, Karl; Ratera, Imma; Villaverde, Antonio; Veciana, Jaume (2013). Two-dimensional microscale engineering of protein-based nanoparticles for cell guidance. ACS Nano, 7 (6), 4774−4784. 10.1021/nn400907f

Sannik, U.; Reede, T.; Lepasalu, L.; Olt, J.; Karus, A.; Põldvere, A.; Soidla, R.; Veri, K.; Poikalainen, V. (2013). Utilization of animal by-products and waste generated in Estonia. Agronomy Research, 11 (1), 255−260.

2012

Kubáň, P.; Kobrin, E.-G.; Kaljurand, M. (2012). Capillary electrophoresis – A new tool for ionic analysis of exhaled breath condensate. Journal of Chromatography A, 1267 (7), 239−245. 10.1016/j.chroma.2012.06.085

Vaher, M.; Helmja, K.; Käsper, A.; Kurasin, M.; Väljamäe, P.; Kudrjasova, M.; Koel, M.; Kaljurand, M. (2012). Capillary electrophoretic monitoring of hydrothermal pre-treatment and enzymatic hydrolysis of willow: comparison with HPLC and NMR. Catalysis Today, 196 (1), 34−41. 10.1016/j.cattod.2012.02.047

Arike, L.; Valgepea, K.; Peil, L.; Nahku, R.; Adamberg, K.; Vilu, R. (2012). Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli. Journal of Proteomics, 75 (17), 5437−5448. 10.1016/j.jprot.2012.06.020

Kriščiunaite, T.; Stulova, I.; Taivosalo, A.; Laht, T.-M.; Vilu, R. (2012). Composition and renneting properties of raw bulk milk in Estonia. International Dairy Journal, 23 (1), 45−52. 10.1016/j.idairyj.2011.09.013

Adamberg, K.; Seiman, A.; Vilu, R. (2012). Increased Biomass Yield of Lactococcus lactis by Reduced Overconsumption of Amino Acids and Increased Catalytic Activities of Enzymes. PLoS ONE, 7 (10), e48223. 10.1371/journal.pone.0048223

Pitk, P.; Kaparaju, P.; Vilu, R. (2012). Methane potential of sterilized solid slaughterhouse wastes. Bioresource Technology, 116, 42−46. 10.1016/j.biortech.2012.04.038

Kabanova, N.; Stulova, I.; Vilu, R. (2012). Microcalorimetric study of the growth of bacterial colonies of Lactococcus lactis IL1403 in agar gels. Food Microbiology, 29 (1), 67−79. 10.1016/j.fm.2011.08.018

Turks, M.; Rijkure, I.; Belyakov, S.; Zicāne, D.; Kumpiņš, V.; Bizdēna, Ē.; Meikas, A.; Valkna, A. (2012). On differences between racemic and enantiomerically pure forms of aziridine-2-carboxamide. Chemistry of Heterocyclic Compounds, 48 (6), 928−935. 10.1007/s10593-012-1067-2

Gavrilova, O.; Vilu, R. (2012). Production-based and consumption-based national greenhouse gas inventories: An implication for Estonia. Ecological Economics, 75, 161−173. 10.1016/j.ecolecon.2012.01.020

Mihhalevski, Anna; Heinmaa, Ivo; Traksmaa, Rainer; Pehk, Tõnis; Mere, Arvo; Paalme, Toomas (2012). Structural changes of starch during baking and staling of rye bread. Journal of Agricultural and Food Chemistry, 60 (34), 8492−8500. 10.1021/jf3021877

Sumeri, I.; Adamberg, S.; Uusna, R.; Sarand, I.; Paalme, T. (2012). Survival of cheese bacteria in a gastrointestinal tract simulator. International Dairy Journal, 25 (1), 36−41. 10.1016/j.idairyj.2011.12.016

Lints, T. (2012). The essentials of defining adaptation. IEEE Aerospace and Electronic Systems Magazine, 27 (1), 37−41. 10.1109/MAES.2012.6145439

Orumets, Kerti; Kevvai, Kaspar; Nisamedtinov, I; Tamm, T; Paalme, T. (2012). YAP1 over‐expression in Saccharomyces cerevisiae enhances glutathione accumulation at its biosynthesis and substrate availability levels. Biotechnology Journal, 7 (4), 566−568. 10.1002/biot.201100363

2011

Kaseleht, K.; Paalme, T.; Mihhalevski, A.; Sarand, I. (2011). Analysis of volatile compounds produced by different species of lactobacilli in rye sourdough using multiple headspace extraction. International Journal of Food Science Technology, 46 (9), 1940−1946. 10.1111/j.1365-2621.2011.02705.x

Valgepea, K.; Adamberg, K.; Vilu, R. (2011). Decrease of energy spilling in Escherichia coli continuous cultures with rising specific growth rate and carbon wasting. BMC Systems Biology, 5, #106. 10.1186/1752-0509-5-106

Kaseleht, K.; Leitner, E.; Paalme, T. (2011). Determining Aroma-active Compounds in Kama Flour Using SPME-GC/MS and GC-Olfactometry. Flavour and Fragrance Journal, 26 (2), 122−128. 10.1002/ffj.2032

Koppel, K.; Chambers, E. IV; Chambers, D.H. (2011). Flavour and Acceptance of Estonian Cheeses. Agronomy Research, 9 (2), 409−414.

Mihhalevski, A.; Sarand, I.; Viiard, E.; Salumets, A.; Paalme, T. (2011). Growth characterization of individual rye sourdough bacteria by isothermal microcalorimetry. Journal of Applied Microbiology, 110 (2), 529−540. 10.1111/j.1365-2672.2010.04904.x

Vázquez-Araújo, L., Koppel, K., Chambers, E. IV, Adhikari, K., Carbonell-Barrachina, A. (2011). Instrumental and Sensory Aroma Profile of Pomegranate Juices from the USA: Differences between Fresh Juice and Commercial Juices. Flavour and Fragrance Journal, 26 (2), 129−138. 10.1002/ffj.2035

Nisamedtinov, I.; Kevvai, K.; Orumets, K.; Arike, L.; Sarand, I.; Korhola, M.; Paalme, T. (2011). Metabolic changes underlying the higher accumulation of glutathione in Saccharomyces cerevisiae mutants. Applied Microbiology and Biotechnology, 89 (4), 1029−1037. 10.1007/s00253-010-2946-z

Lahtvee, P.-J.; Adamberg, K.; Arike, L.; Nahku, R.; Aller, K.; Vilu, R. (2011). Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates. Microbial Cell Factories, 10, #12. 10.1186/1475-2859-10-12

Koppel, K.; Timberg, L.; Salumets, A.; Paalme, T. (2011). Possibility for a strawberry jam sensory standard. Journal of Sensory Studies, 26 (1), 71−80. 10.1111/j.1745-459X.2010.00323.x

Enkvist, E.; Vaasa, A.; Kasari, M.; Kriisa, M.; Ivan, T.; Ligi, K.; Raidaru, G.; Uri, A. (2011). Protein-Induced Long Lifetime Luminescence of Nonmetal Probes. ACS Chemical Biology, 6 (10), 1052−1062. 10.1021/cb200120v

Kaseleht, K., Paalme, T., Nisamedtinov, I. (2011). Quantitative Analysis of Acetaldehyde in Foods Consumed by Children using SPME/GC-MS(Tof), On-fiber Derivatization and Deuterated Acetaldehyde as an Internal Standard. Agronomy Research, 9 (2), 395−401.

Timberg, L.; Koppel, K.; Kuldjärv, R.; Paalme, T. (2011). Rainbow trout composition and fatty acid content in Estonia. Agronomy Research, 9 (2), 495−500.

Timberg, L.; Koppel, K.; Kuldjärv, R.; Paalme, T. (2011). Sensory and chemical properties of Baltic sprat (Sprattus sprattus balticus) and Baltic herring (Clupea harengus membras) in different catching seasons. Agronomy Research, 9 (2), 489−494.

Nahku, R.; Peebo, K.; Valgepea, K.; Barrick, J. E.; Adamberg, K.; Vilu, R. (2011). Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture. Microbiology-SGM, 157 (9), 2604−2610. 10.1099/mic.0.050658-0

Laos, K.; Kirs, E.; Pall, R.; Martverk, K. (2011). The crystallization behaviour of Estonian honeys. Agronomy Research, 9 (2), 427−432.

Kriščiunaite, T.; Stulova, I.; Kabanova, N.; Laht, T.-M.; Vilu, R. (2011). The effect of hydrogen peroxide on the growth of thermophilic lactic starter and acid gelation of UHT milk. International Dairy Journal, 21 (4), 239−246. 10.1016/j.idairyj.2010.11.012

Stulova, I.; Kabanova, N.; Kriščiunaite, T.; Laht, T.-M.; Vilu, R. (2011). The effect of milk heat treatment on the growth characteristics of lactic acid bacteria. Agronomy Research, 9 (2), 473−478.

Klesment, T.; Stekolštšikova, J.; Laos, K. (2011). The influence of hydrocolloids on storage quality of 10% dairy fat ice cream. Agronomy Research, 9 (2), 403−408.

Helmja, K.; Vaher, M.; Püssa, T.; Orav, A.; Viitak, A.; Levandi, T.; Kaljurand, M. (2011). Variation in the composition of the essential oils, phenolic compounds and mineral elements of Hypericum perforatum L. growing in Estonia. Natural Product Research, 25 (5), 496−510. 10.1080/14786411003792165

2010

Gavrilova, O.; Vilu, R.; Vallner, L. (2010). A life cycle environmental impact assessment of oil shale produced and consumed in Estonia. Resources, Conservation Recycling, 55 (2), 232−245. 10.1016/j.resconrec.2010.09.013

Koppel, K., Chambers, E. IV (2010). Development and application of a lexicon to describe the flavor of pomegranate juice. Journal of Sensory Studies, 25 (6), 819−837. 10.1111/j.1745-459X.2010.00307.x

Sumeri, I.; Arike, L.; Stekolštšikova, J.; Uusna, R.; Adamberg, S. Adamberg, K.; Paalme, T. (2010). Effect of stress pretreatment on survival of probiotic bacteria in gastrointestinal tract simulator. Applied Microbiology and Biotechnology, 86 (6), 1925−1931. 10.1007/s00253-009-2429-2

Schmitz, A.; Thormann, W.; Moessner, L.; Theurillat, R.; Helmja, K.; Mevissen, M. (2010). Enantioselective CE analysis of hepatic ketamine metabolism in different species in vitro. Electrophoresis, 31, 1506−1516. 10.1002/elps.200900703

Nisamedtinov, I.; Kevvai, K.; Orumets, K.; Rautio, J.; Paalme, T. (2010). Glutathione accumulation in ethanol-stat fed-batch culture of Saccharomyces cerevisiae with a switch to cysteine feeding. Applied Microbiology and Biotechnology, 87 (1), 175−183. 10.1007/s00253-010-2502-x

Arike, L.; Nahku, R.; Borissova, M.; Adamberg, K.; Vilu, R. (2010). Identification and relative quantification of proteins in Escherichia coli proteome by "up-front" collision-induced dissociation. European journal of mass spectrometry, 16 (2), 227−235. 10.1255/ejms.1068

Skerget, K.; Taler-Vercic, A.; Bavdek, A.; Hodnik, V.; Ceru, S.; Tusek-Znidaric, M.; Kumm, T.; Pitsi, D.; Pompe-Novak, M.; Palumaa, P.; Soriano, S.; Kopitar-Jerala, N.; Turk, V.; Anderluh, G.; Zerovnik, E. (2010). Interaction between oligomers of stefin B and amyloid-beta in vitro and in cells. Journal of Biological Chemistry, 285 (5), 3201−3210. 10.1074/jbc.M109.024620

Stulova, I.; Adamberg, S.; Krisciunaite, T.; Kampura, M.; Blank, L.; Laht, T.-M. (2010). Microbiological quality of raw milk produced in Estonia. Letters in Applied Microbiology, 51 (6), 683−690. 10.1111/j.1472-765X.2010.02951.x

Vaher, M.; Matso, K.; Levandi, T.; Helmja, K.; Kaljurand, M. (2010). Phenolic compounds and antioxidant activity of bran, flour and whole grain of different wheat varieties. Procedia Chemistry, 2, 76−82.

Nahku, R.; Valgepea, K.; Lahtvee, P.-J.; Erm, S.; Abner, K.; Adamberg, K.; Vilu, R. (2010). Specific growth rate dependent transcriptome profiling of Escherichia coli K12 MG1655 in accelerostat cultures. Journal of Biotechnology, 145 (1), 60−65. 10.1016/j.jbiotec.2009.10.007

Valgepea, K.; Adamberg, K.; Nahku, R.; Lahtvee, P.-J.; Arike, L.; Vilu, R. (2010). Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase. BMC Systems Biology, 4, #166. 10.1186/1752-0509-4-166

Spitsmeister, M.; Adamberg, K.; Vilu, R. (2010). UPLC/MS based method for quantitative determination of fatty acid composition in Gram-negative and Gram-positive bacteria. Journal of Microbiological Methods, 82 (3), 288−295. 10.1016/j.mimet.2010.07.006

2009

Helmja, K.; Vaher, M.; Püssa, T.; Kaljurand, M. (2009). Analysis of the stable free radical scavenging capability of artificial polyphenol mixtures and plant extracts by capillary electrophoresis and liquid chromatography-diode array detection-tandem mass spectrometry. Journal of Chromatography A, 1216 (12), 2417−2423.

Riid, A.; Preden, J.; Pahtma, R.; Serg, R.; Lints, T. (2009). Automatic Code Generation for Embedded Systems from High-Level Models. Electronics and Electrical Engineering, 95 (7), 33−36.

Enkvist, E.; Kriisa, M.; Roben, M.; Kadak, G.; Raidaru, G.; Uri, A. (2009). Effect of the structure of adenosine mimic of bisubstrate-analog inhibitors on their activity towards basophilic protein kinases. Bioorganic Medicinal Chemistry Letters, 21 (1), 6098−6101. 10.1016/j.bmcl.2009.09.026

Helmja, K.; Borissova, M.; Knjazeva, T.; Jaanus, M.; Muinasmaa, U.; Kaljurand, M.; Vaher, M. (2009). Fraction collection in capillary electrophoresis for various stand-alone mass spectrometers. Journal of Chromatography A, 1216 (17), 3666−3673.

Kabanova, N.; Kazarjan, A.; Stulova, I.; Vilu, R. (2009). Microcalorimetric study of growth of Lactococcus lactis IL1403 at different glucose concentrations in broth. Thermochimica Acta, 496 (1-2), 87−92. 10.1016/j.tca.2009.07.003

Kazantseva, A.; Sepp, M.; Kazantseva, J.; Sadam, H.; Pruunsild, P.; Timmusk, T.; Neuman, T.; Palm, K. (2009). N-terminally truncated BAF57 isoforms contribute to the diversity of SWI/SNF complexes in neurons. Journal of Neurochemistry, 109 (3), 807−818. 10.1111/j.1471-4159.2009.06005.x

Adamberg, K.; Lahtvee, P.-J.; Valgepea, K.; Abner, K.; Vilu, R. (2009). Quasi steady state growth of Lactococcus lactis in glucose-limited acceleration stat (A-stat) cultures. Antonie van Leeuwenhoek, 95 (3), 219−226. 10.1007/s10482-009-9305-z

Lahtvee, P.-J.; Valgepea, K.; Nahku, R.; Abner, K.; Adamberg, K.; Vilu, R. (2009). Steady state growth space study of Lactococcus lactis in D-stat cultures. Antonie van Leeuwenhoek, 96 (4), 487−496 . 10.1007/s10482-009-9363-2

2008

Dugo, Paola; Herrero, Miguel; Giuffrida, Daniele; Kumm, Tiina; Dugo, Giovanni; Mondello, Luigi (2008). Application of Comprehensive Two-Dimensional Liquid Chromatography To Elucidate the Native Carotenoid Composition in Red Orange Essential Oil. Journal of Agricultural and Food Chemistry, 56 (10), 3478−3485. 10.1021/jf800144v

Dugo, Paola; Cacciola, Francesco; Kumm, Tiina; Dugo, Giovanni; Mondello, Luigi (2008). Comprehensive multidimensional liquid chromatography: Theory and applications. Journal of Chromatography A, 1184 (1-2), 353−368. 10.1016/j.chroma.2007.06.074

Dugo, Paola; Herrero, Miguel; Kumm, Tiina; Giuffrida, Daniele; Dugo, Giovanni; Mondello, Luigi (2008). Comprehensive normal-phase x reversed-phase liquid chromatography coupled to photodiode array and mass spectrometry detectors for the analysis of free carotenoids and carotenoid esters from mandarin. Journal of Chromatography A, 1189, 196−206.

Helmja, K.; Vaher, M.; Püssa, T.; Raudsepp, P.; Kaljurand, M. (2008). Evaluation of antioxidative capability of the tomato (Solanum lycopersicum) skin constituents by capillary electrophoresis and high-perfoemance liquid chromatography. Electrophoresis, 3980−3988.

Mondello, Luigi; Herrero, Miguel; Kumm, Tiina; Dugo, Paola; Cortes, Hernan; Dugo, Giovanni (2008). Quantification in Comprehensive Two-Dimensional Liquid Chromatography. Analytical Chemistry, 80 (14), 5418−5424. 10.1021/ac800484y

Sumeri, I.; Arike, L.; Adamberg, K.; Paalme, T. (2008). Single bioreactor gastrointestinal tract simulator for study of survival of probiotic bacteria. Applied Microbiology and Biotechnology, 80 (2), 317−324. 10.1007/s00253-008-1553-8

Nisamedtinov, I.; Lindsey, G. G.; Karreman, R.; Orumets, K.; Koplimaa, M.; Kevvai, K.; Paalme, T. (2008). The response of the yeast Saccharomyces cerevisiae to sudden vs. gradual changes in environmental stress monitored by expression of the stress response protein Hsp12p. FEMS Yeast Research, 8 (6), 829−838. 10.1111/j.1567-1364.2008.00391.x

Dugo, P.; Kumm, T.; Cacciola, F.; Dugo, G.; Mondello, L. (2008). Multidimensional Liquid Chromatographic Separations Applied to the Analysis of Food Samples. Journal of Liquid Chromatography Related Technologies, 31, 1758−1807. 10.1080/10826070802128888

2007

Helmja, K.; Vaher, M.; Püssa, T.; Kamsol, K.; Orav, A.; Kaljurand, M. (2007). Bioactive components of the hop strobilus: Comparison of different extraction methods by capillary electrophoretic and chromatographic methods. Journal of Chromatography A, 1155 (2), 222−229.

Voronova, A.; Kazantseva, J.; Tuuling, M.; Sokolova, N.; Sillard, R.;L Palumaa, P. (2007). Cox17, a copper chaperone for cytochrome c oxidase: Expression, purification and formation of mixed disulfide adducts with thiol reagents. Protein Expression and Purification, 53 (1), 138−144. 10.1016/j.pep.2006.11.014

Kasemets K., Nisamedtinov I., Laht T.-M.,Abner K., Paalme T. (2007). Growth characteristics of Saccharomyces cerevisiae S288C in changing environmental conditions: auxo-accelerostat study. Antonie van Leeuwenhoek, 92 (1), 109−128. 10.1007/s10482-007-9141-y

Voronova, A.; Meyer-Klaucke, W.; Meyer, T.; Rompel, A.; Krebs, B.; Kazantseva, J.; Sillard, R.; Palumaa, P. (2007). Oxidative switches in functioning of mammalian copper chaperone Cox17. Biochemical Journal, 408 (1), 139−148. 10.1042/BJ20070804

2006

Paalme, Toomas; Nisamedtinov, Ildar; Abner, Kristo; Laht, Tiiu-Maie; Drews, Monika; Pehk, Tõnis (2006). Application of 13C-[2]- and 13C-[1,2] acetate in metabolic labelling studies of yeast and insect cells. Antonie van Leeuwenhoek, 89, 443−457. 10.1007/s10482-005-9053-7

Sarmiento, C.; Nigul, L.; Kazantseva, J.; Buschmann, M.; Truve, E. (2006). AtRLI2 is an endogenous suppressor of RNA silencing. Plant Molecular Biology, 61, 153−163. 10.1007/s11103-005-0001-8

Dugo, P.; Kumm, T.; Crupi, M.L.; Cotroneo, A.; Mondello, L. (2006). Comprehensive Two-Dimensional Liquid Chromatography Combined with Mass Spectrometric Detection in the Analyses of Triacylglycerols in Natural Lipidic Matrices. Journal of Chromatography A, 1112, 269−275.

Dugo, Paola; Kumm, Tiina; Fazio, Alessia; Dugo, Giovanni; Mondello, Luigi (2006). Determination of beef tallow in lard through a multidimensional off-line Non Aqueous Reversed Phase/Argentation LC method coupled to Mass Spectrometry. Journal of Separation Science, 29, 567−575.

Dugo, Paola; Škeříková, Veronika; Kumm, Tiina; Trozzi, Alessandra; Jandera, Pavel; Mondello, Luigi (2006). Elucidation of carotenoid patterns in citrus products by means of comprehensive normal phase x reversed phase liquid cromatography. Analytical Chemistry, 78 (22), 7743−7750. 10.1021/ac061290q

Tahkoniemi, H.; Helmja, K.; Menert, A.; Kaljurand, M. (2006). Fermentation reactor coupled with capillary electropherophoresis for on-line bioprocess monitoring. Journal of Pharmaceutical and Biomedical Analysis, 41 (5), 1585−1591. 10.1016/j.jpba.2006.01.042

Meloni, G.; Zovo, K.; Kazantseva, J.; Palumaa, P.; Vasak, M. (2006). Organization and assembly of metal-thiolate clusters in epithelium-specific metallothionein-4. Journal of Biological Chemistry, 281 (21), 14588−14595. 10.1074/jbc.M601724200

Dugo, Paola; Kumm, Tiina; Chiofalo, Biagina; Cotroneo, Antonella; Mondello, Luigi (2006). Separation of triacylglycerols in a complex lipidic matrix by using comprehensive two-dimensional liquid chromatography coupled with atmospheric pressure chemical ionization mass spectrometric detection. Journal of Separation Science, 29 (8), 1146−1154. 10.1002/jssc.200500476

Adamberg, K.; Adamberg, S.; Laht, T.-M.; Ardö, Y.; Paalme, T. (2006). Study of Cheese Associated Lactic Acid Bacteria under Carbohydrate-Limited Conditions Using D-stat Cultivation. Food Biotechnology, 20 (2), 143−160. 10.1080/08905430600709412

2005

Dugo, Paola; Kumm, Tiina; Lo Presti, Maria; Chiofalo, Biagina; Salimei, Elisabetta; Fazio, Alessia; Cotroneo, Antonella; Mondello, Luigi. (2005). Determination of triacylglycerols in donkey milk by using high performance liquid chromatography coupled with atmospheric pressure chemical ionization mass spectrometry. Journal of Separation Science, 28, 1023−1030.

Kilk, K.; El-Andaloussi, S.; Jarver, P.; Meikas, A.; Valkna, A.; Bartfai, T.; Kogerman, P.; Metsis, M.; Langel, U. (2005). Evaluation of transportan 10 in PEI mediated plasmid delivery assay. Journal of Controlled Release, 103 (2), 511−523. 10.1016/j.jconrel.2004.12.006

Adamberg, K.; Antonsson, M.; Vogensen, FK.; Nielsen, EW.; Kask, S.; Moller, PL.; Ardo, Y (2005). Fermentation of carbohydrates from cheese sources by non-starter lactic acid bacteria isolated from semi-hard Danish cheese. International Dairy Journal, 15, 873−882.

2004

Menert, A.; Paalme, V.; Juhkam, J.; Vilu, R (2004). Characterization of sulfate-reducing bacteria in yeast industry waste by microcalorimetry and PCR amplification. Thermochimica Acta, 420, 89−98. 10.1016/j.tca.2003.12.032

Orav, Anne.; Stulova, Irina.; Kailas, Tiiu.; Müürisepp, Mati (2004). Effect of storage on the essential oil composition of Piper nigrum L. fruits of different ripening states. Journal of Agricultural and Food Chemistry, 52 (9), 2582−2586.

2003

Kasemets, K.; Drews, M.; Nisamedtinov, I.; Adamberg, K.; Paalme, T (2003). Modification of A-stat for the characterization of microorganisms. Journal of Microbiological Methods, 55 (1), 187−200.

Kask, S.; Adamberg, K.; Orlowski, A.; Vogensen, FK.; Moller, PL.; Ardo, Y.; Paalme, T (2003). Physiological properties of Lactobacillus paracasei, L. Danicus and L-curvatus strains isolated from Estonian semi-hard cheese. Food Research international, 36, 1037−1046.

Adamberg, K.; Kask, S.; Laht, TM.; Paalme, T (2003). The effect of temperature and ph on the growth of lactic acid bacteria: a ph-auxostat study. International Journal of Food Microbiology, 85, 171−183.

Blonskaja, V.; Menert, A.; Vilu, R (2003). Use of two-stage anaerobic treatment for distillery waste. Advances in Environmental Research, 7 (3), 671−678.

2002

Kulp, Maria; Vassiljeva, Irina; Vilu, Raivo; Kaljurand, Mihkel (2002). Monitoring of the degradation of phenols by Rhodococcus bacteria by using micellar electrokinetic chromatography. Journal of Separation Science, 25, 1129−1135.

Laht, Tiiu-Maie; Kask, Signe; Elias, Priit; Adamberg, Kaarel; Paalme, Toomas (2002). Role of Arginine in the Development of Secondary Microflora in Swiss-Type Cheese. International Dairy Journal, 12 (10), 831−840.

2001

Menert, A.; Liiders, M.; Kurissoo, T.; Vilu, R (2001). Microcalorimetric monitoring of anaerobic digestion processes. Journal of Thermal Analysis and Calorimetry, 64 (1), 281−291.

Ehala, S.; Vassiljeva, I.; Kuldvee, R.; Vilu, R.; Kaljurand, M (2001). On-line coupling of a miniaturized bioreactor with capillary electrophoresis, via a membrane interface, for monitoring the production of organic acids by microorganisms. Fresenius Journal of Analytical Chemistry, 371 (2), 168−173.

2000

Chen, J.; Dagher, SM.; Fisher, CE.; Grunow, W.; Hattan, DG.; Kawamura, Y.; Knaap, AGAC.; Kuznesof, PM.; Larsen, JC.; Meyland, I.; Pascal, G.; Riordan, M.; Walker, R.; Wilson, JD.; Akkelidou, D.; Bellinger, DC.; Bolger, M.; Carrington, C.; Dewailly, E.; DiNovi, M., Eriksen, GS.; Greig, J.; Hecker, EFF.; Herrman, JL.; Hotchkiss, JH.; Madsen, C.; Magos, LPA.; Mattia, A.; Moy, G.; Munro, IC.; Nishikawa, A.; Pennington, JA.; Petersen, B.; Renwick, AG.; Resnik, S.; Schlatter, J.; Sipes, GI.; Speijers, GJA.; Vavasour, E.; Verger, JP.; Vilu, R.; Wallin, H.; Weatherwax, J.; Whitehouse, DB (2000). Evaluation of certain food additives and contaminants. Evaluation of Certain Food Additives and Contaminants, 53rd Report, 896, 1−128.

1999

Rozkov, A.; Vassiljeva, I.; Kurvet, M.; Kahru, A.; Preis, S.; Kharchenko, A.; Krichevskaya, M.; Liiv, M.; Kaard, A.; Vilu, R (1999). Laboratory study of bioremediation of rocket fuel-polluted groundwater. Water Research, 33 (5), 1303−1313.

1998

Kallastu, A.; Hõrak, R.; Kivisaar, M. (1998). Identification and characterization of IS1411, a new insertion sequence which causes transcriptional activation of the phenol degradation genes in Pseudomonas putida. Journal of Bacteriology, 180 (20), 5306−5312.

1997

Rozkov, A.; Kaard, A.; Vilu, R (1997). Biodegradation of dissolved jet fuel in chemostat by a mixed bacterial culture isolated from a heavily polluted site. Biodegradation, 8 (6), 363−369.

Gudima, S.O.; Kazantseva, E.G.; Kostjuk, D.A. (1997). Deoxynucleotide-containing RNAs: a novel class of templates for HIV-I reverse transcriptase. Nucleic Acids Research, 25 (22), 4614−4618.

Paalme, T.; Elken, R.; Vilu, R.; Korhola, M. (1997). Growth efficiency of Saccharomyces cerevisiae on glucose/ethanol media with a smooth change in the dilution rate (A-stat). Enzyme and Microbial Technology, 20 (3), 174−181.

Paalme, T.; Elken, R.; Kahru, A.; Vanatalu, K.; Vilu, R. (1997). The growth rate control in Escherichia coli at near to maximum growth rates: the A-stat approach. Antonie van Leeuwenhoek, 71 (3), 217−230.

1995

Paalme, T.; Kahru, A.; Elken, R.; Vanatalu, K.;Tiisma, K.; Vilu, R. (1995). The Computer- Controlled Continuous Culture of Escherichia coli with Smooth Change of Dilution rate. A-stat. Journal of Microbiological Methods, 24, 145−153.

Drews, M.; Paalme, T.; Vilu, R. (1995). The growth and nutrient utilization of the insect cell line Spodoptera frugiperda Sf9 cells in batch and continuous culture. Journal of Biotechnology, 40 (3), 187−198.

1993

Vanatalu, K.; Paalme, T.; Vilu, R.; Burkhardt, N.; Junemann, R.; May, R.; Ruhl, M.; Wadzack, J.; Nierhaus, K.H. (1993). Large-scale preparation of fully deuterated cell components - ribosomes from Escherichis coli with high biological activity. European Journal of Biochemistry, 216 (1), 315−321.

Sarand, I.; Mae, A.; Vilu, R.; Heinaru, A. (1993). New derivatives of tol plasmid pww0. Journal of General Microbiology, 139, 2379−2385.

1990

Paalme, T.; Tiisma, K.; Kahru, A.; Vanatalu, K; Vilu, R. (1990). Glucose-limited fed-batch cultivation of Escherichia coli with computer-controlled fixed growth rate. Biotechnology and Bioengineering, 35, 312−319.

Kahru, A.; Vilu, R. (1990). The role of the adenine nucleotides in the regulation of bacterial energy metabolism: theoretical problems and experimental pitfalls. Microbios. 62, 83−92.

1989

Schafer, S.; Paalme, T.; Vilu, R.; Fuchs, G. (1989). C-13-NMR STUDY OF ACETATE ASSIMILATION IN THERMOPROTEUS-NEUTROPHILUS. European Journal of Biochemistry, 186 (3), 695−700.

1988

Kahru, A.; Vilu, R. (1988). Use of the luciferin-luciferase assay of ATP for measuring the bacterial growth: application to Escherichia coli. Acta Biotechnologica, 8, 93−98.

1987

Kahru, A.; Paalme, T.; Vilu, R. (1987). Effect of temperature on the ATP pool and adenylate energy charge of Escherichia coli. FEMS Microbiology Letters, 41 (3), 305−308.

1983

Kahru, A.; Vilu, R. (1983). On characterization of the growth of Escherichia coli in batch culture. Archives of Microbiology, 135 (1), 12−15.

1982

Kahru, A.; Liiders, M.; Vanatalu, K.; Vilu, R. (1982). Adenylate energy charge during batch culture of Thermoactinomyces vulgaris. Archives of Microbiology, 133 (2), 142−144.

Paalme, T.; Olivson, A.; Vilu, R. (1982). C-13-NMR Study of CO2-Fixation During the Heterotrophic Growth in Chlorobium-thiosulfatophilum. Biochimica et Biophysica Acta, 720 (3), 311−319.

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