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Lahtvee, Petri-Jaan; Seiman, Andrus; Arike, Liisa; Adamberg, Kaarel; Vilu, Raivo (2014). Protein turnover forms one of the highest maintenance costs in Lactococcus lactis. Microbiology-SGM, 160 (7), 1501−1512. 10.1099/mic.0.078089-0

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Timberg, L.; Koppel, K.; Kuldjärv, R.; Chambers IV, E.; Soontrunnarudrungsr, A.; Suwonsichon, S.; Paalme, T. (2014). Seasoned Sprat Products Acceptance in Estonia and in Thailand. Journal of Aquatic Food Product Technology, 23 (6), 552−566. 10.1080/10498850.2012.735748

Abner, K.; Aaviksaar, T.; Adamberg, K.; Vilu, R. (2014). Single-cell model of prokaryotic cell cycle. Journal of Theoretical Biology, 341, 78−87. 10.1016/j.jtbi.2013.09.035

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Adamberg, S.; Sumeri, I.; Uusna, R.; Ambalam, P.; Kondepudi, K. K.; Adamberg, K.; Wadström, T.; Ljungh, Å. (2014). Survival and synergistic growth of mixed cultures of bifidobacteria and lactobacilli combined with prebiotic oligosaccharides in a gastrointestinal tract simulator. Microbial Ecology in Health and Disease, 25, 1−9. 10.3402/mehd.v25.23062

Pedastsaar, P.; Vaher, M.; Helmja, K.; Kulp, M.;Kaljurand, M.; Karp, K.; Raal, A.; Karathanos, V.; Püssa, T. (2014). The Chemical Composition of Red Wines made from Hybrid Grape and Common Crape. Proceedings of the Estonian Academy of Sciences, 63 (4), 444−453.

Klesment, T.; Stekolštšikova, J.; Laos, K. (2014). The influence of guar gum/furcellaran and guar gum/carrageenan stabilizer systems on the rheological and sensorial properties of ice cream during storage. Proceedings of the Estonian Academy of Sciences, 63 (2), 193−198. 10.3176/proc.2014.2.09

Paalme, T.; Kevvai, K.; Vilbaste, A.; Haelvin, K.; Nisamedtinov, I. (2014). Uptake and accumulation of B-group vitamers in Saccharomyces cerevisiae in ethanol-stat fed-batch culture. World Journal of Microbiology and Biotechnology, 30 (9), 2351−2359. 10.1007/s11274-014-1660-x

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Vene, K.; Seisonen, S.; Koppel, K.; Leitner, E.; Paalme, T. (2013). A Method for GC-Olfactometry Panel Training. Chemosensory Perception, 6 (4), 179−189. 10.1007/s12078-013-9156-x

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Pitk, P.; Palatsi, J.; Affes, R.; Kaparaju, P.; Vilu, R. (2013). Co-digestion of sewage sludge and sterilized solid slaughterhouse waste: methane production efficiency and process limitations. Bioresource Technology, 134, 227−232. 10.1016/j.biortech.2013.02.029

Hälvin, K.; Paalme, T.; Nisamedtinov, I. (2013). Comparison of different extraction methods for simultaneous determination of B-complex vitamins in nutritional yeast using LC/MS-TOF and stable isotope dilution assay. Analytical and Bioanalytical Chemistry, 405 (4), 1213−1222. 10.1007/s00216-012-6538-x

Valgepea, K.; Adamberg, K.; Seiman, A.; Vilu, R. (2013). Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins. Molecular BioSystems, 9 (9), 2344−2358. 10.1039/c3mb70119k

Viiard, E.; Mihhalevski, A.; Rühka, T.; Paalme, T.; Sarand, I. (2013). Evaluation of the microbial community in industrial rye sourdough upon continuous back-slopping propagation revealed Lactobacillus helveticus as the dominant species. Journal of Applied Microbiology, 114 (2), 404−412. 10.1111/jam.12045

Stulova, I.; Kabanova, N.; Kriščiunaite, T.; Taivosalo, A.; Laht, T.-M.; Vilu, R. (2013). Fermentation of reconstituted milk by Streptococcus thermophilus: Effect of irradiation on skim milk powder. International Dairy Journal, 31 (2), 139−149. 10.1016/j.idairyj.2013.02.004

Akk, Elina; Lõiveke, Heino; Edesi, Liina; Kütt, Mary-Liis; Lauringson, Enn; Kastanje, Veiko. (2013). Formation of the abundance of microfungi on the barley grain grown as pure and mixed crops in Central and North Estonia. Estonian Journal of Ecology, 62 (4), 265−275. 10.3176/eco.2013.4.03

Pey, J.; Valgepea, K.; Rubio, A.; Beasley, J. E.; Planes, F. J. (2013). Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways. BMC Systems Biology, 7 (1), #134. 10.1186/1752-0509-7-134

Kabanova, N.; Stulova, I.; Vilu, R. (2013). Microcalorimetric study of growth of Lactococcus lactis IL1403 at low glucose concentration in liquids and solid agar gels. Thermochimica Acta, 559, 69−75. 10.1016/j.tca.2013.02.013

Mihhalevski, Anna; Nisamedtinov, Ildar; Hälvin, Kristel; Ošeka, Aleksandra; Paalme, Toomas (2013). Stability of B-complex vitamins and dietary fiber during rye sourdough bread production. Journal of Cereal Science, 57 (1), 30−38. 10.1016/j.jcs.2012.09.007

Taler-Verčič, A.; Kirsipuu, T.; Friedemann, M.; Noormägi, A.; Polajnar, M.; Smirnova, J.; Znidarič, MT.; Zganec, M.; Skarabot, M.; Vilfan, A.; Staniforth, RA.; Palumaa, P.; Zerovnik, E. (2013). The role of initial oligomers in amyloid fibril formation by human stefin B. International Journal of Molecular Sciences, 14 (9), 18362−18384. 10.3390/ijms140918362

Tatkiewicz, Witold I.; Seras-Franzoso, Joaquin; Garcia-Fruitos, Elena; Vazquez, Esther; Ventosa, Nora; Peebo, Karl; Ratera, Imma; Villaverde, Antonio; Veciana, Jaume (2013). Two-dimensional microscale engineering of protein-based nanoparticles for cell guidance. ACS Nano, 7 (6), 4774−4784. 10.1021/nn400907f

Sannik, U.; Reede, T.; Lepasalu, L.; Olt, J.; Karus, A.; Põldvere, A.; Soidla, R.; Veri, K.; Poikalainen, V. (2013). Utilization of animal by-products and waste generated in Estonia. Agronomy Research, 11 (1), 255−260.


Kubáň, P.; Kobrin, E.-G.; Kaljurand, M. (2012). Capillary electrophoresis – A new tool for ionic analysis of exhaled breath condensate. Journal of Chromatography A, 1267 (7), 239−245. 10.1016/j.chroma.2012.06.085

Vaher, M.; Helmja, K.; Käsper, A.; Kurasin, M.; Väljamäe, P.; Kudrjasova, M.; Koel, M.; Kaljurand, M. (2012). Capillary electrophoretic monitoring of hydrothermal pre-treatment and enzymatic hydrolysis of willow: comparison with HPLC and NMR. Catalysis Today, 196 (1), 34−41. 10.1016/j.cattod.2012.02.047

Arike, L.; Valgepea, K.; Peil, L.; Nahku, R.; Adamberg, K.; Vilu, R. (2012). Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli. Journal of Proteomics, 75 (17), 5437−5448. 10.1016/j.jprot.2012.06.020

Kriščiunaite, T.; Stulova, I.; Taivosalo, A.; Laht, T.-M.; Vilu, R. (2012). Composition and renneting properties of raw bulk milk in Estonia. International Dairy Journal, 23 (1), 45−52. 10.1016/j.idairyj.2011.09.013

Adamberg, K.; Seiman, A.; Vilu, R. (2012). Increased Biomass Yield of Lactococcus lactis by Reduced Overconsumption of Amino Acids and Increased Catalytic Activities of Enzymes. PLoS ONE, 7 (10), e48223. 10.1371/journal.pone.0048223

Pitk, P.; Kaparaju, P.; Vilu, R. (2012). Methane potential of sterilized solid slaughterhouse wastes. Bioresource Technology, 116, 42−46. 10.1016/j.biortech.2012.04.038

Kabanova, N.; Stulova, I.; Vilu, R. (2012). Microcalorimetric study of the growth of bacterial colonies of Lactococcus lactis IL1403 in agar gels. Food Microbiology, 29 (1), 67−79. 10.1016/j.fm.2011.08.018

Turks, M.; Rijkure, I.; Belyakov, S.; Zicāne, D.; Kumpiņš, V.; Bizdēna, Ē.; Meikas, A.; Valkna, A. (2012). On differences between racemic and enantiomerically pure forms of aziridine-2-carboxamide. Chemistry of Heterocyclic Compounds, 48 (6), 928−935. 10.1007/s10593-012-1067-2

Gavrilova, O.; Vilu, R. (2012). Production-based and consumption-based national greenhouse gas inventories: An implication for Estonia. Ecological Economics, 75, 161−173. 10.1016/j.ecolecon.2012.01.020

Mihhalevski, Anna; Heinmaa, Ivo; Traksmaa, Rainer; Pehk, Tõnis; Mere, Arvo; Paalme, Toomas (2012). Structural changes of starch during baking and staling of rye bread. Journal of Agricultural and Food Chemistry, 60 (34), 8492−8500. 10.1021/jf3021877

Sumeri, I.; Adamberg, S.; Uusna, R.; Sarand, I.; Paalme, T. (2012). Survival of cheese bacteria in a gastrointestinal tract simulator. International Dairy Journal, 25 (1), 36−41. 10.1016/j.idairyj.2011.12.016

Lints, T. (2012). The essentials of defining adaptation. IEEE Aerospace and Electronic Systems Magazine, 27 (1), 37−41. 10.1109/MAES.2012.6145439

Orumets, Kerti; Kevvai, Kaspar; Nisamedtinov, I; Tamm, T; Paalme, T. (2012). YAP1 over‐expression in Saccharomyces cerevisiae enhances glutathione accumulation at its biosynthesis and substrate availability levels. Biotechnology Journal, 7 (4), 566−568. 10.1002/biot.201100363


Kaseleht, K.; Paalme, T.; Mihhalevski, A.; Sarand, I. (2011). Analysis of volatile compounds produced by different species of lactobacilli in rye sourdough using multiple headspace extraction. International Journal of Food Science Technology, 46 (9), 1940−1946. 10.1111/j.1365-2621.2011.02705.x

Valgepea, K.; Adamberg, K.; Vilu, R. (2011). Decrease of energy spilling in Escherichia coli continuous cultures with rising specific growth rate and carbon wasting. BMC Systems Biology, 5, #106. 10.1186/1752-0509-5-106

Kaseleht, K.; Leitner, E.; Paalme, T. (2011). Determining Aroma-active Compounds in Kama Flour Using SPME-GC/MS and GC-Olfactometry. Flavour and Fragrance Journal, 26 (2), 122−128. 10.1002/ffj.2032

Koppel, K.; Chambers, E. IV; Chambers, D.H. (2011). Flavour and Acceptance of Estonian Cheeses. Agronomy Research, 9 (2), 409−414.

Mihhalevski, A.; Sarand, I.; Viiard, E.; Salumets, A.; Paalme, T. (2011). Growth characterization of individual rye sourdough bacteria by isothermal microcalorimetry. Journal of Applied Microbiology, 110 (2), 529−540. 10.1111/j.1365-2672.2010.04904.x

Vázquez-Araújo, L., Koppel, K., Chambers, E. IV, Adhikari, K., Carbonell-Barrachina, A. (2011). Instrumental and Sensory Aroma Profile of Pomegranate Juices from the USA: Differences between Fresh Juice and Commercial Juices. Flavour and Fragrance Journal, 26 (2), 129−138. 10.1002/ffj.2035

Nisamedtinov, I.; Kevvai, K.; Orumets, K.; Arike, L.; Sarand, I.; Korhola, M.; Paalme, T. (2011). Metabolic changes underlying the higher accumulation of glutathione in Saccharomyces cerevisiae mutants. Applied Microbiology and Biotechnology, 89 (4), 1029−1037. 10.1007/s00253-010-2946-z

Lahtvee, P.-J.; Adamberg, K.; Arike, L.; Nahku, R.; Aller, K.; Vilu, R. (2011). Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates. Microbial Cell Factories, 10, #12. 10.1186/1475-2859-10-12

Koppel, K.; Timberg, L.; Salumets, A.; Paalme, T. (2011). Possibility for a strawberry jam sensory standard. Journal of Sensory Studies, 26 (1), 71−80. 10.1111/j.1745-459X.2010.00323.x

Enkvist, E.; Vaasa, A.; Kasari, M.; Kriisa, M.; Ivan, T.; Ligi, K.; Raidaru, G.; Uri, A. (2011). Protein-Induced Long Lifetime Luminescence of Nonmetal Probes. ACS Chemical Biology, 6 (10), 1052−1062. 10.1021/cb200120v

Kaseleht, K., Paalme, T., Nisamedtinov, I. (2011). Quantitative Analysis of Acetaldehyde in Foods Consumed by Children using SPME/GC-MS(Tof), On-fiber Derivatization and Deuterated Acetaldehyde as an Internal Standard. Agronomy Research, 9 (2), 395−401.

Timberg, L.; Koppel, K.; Kuldjärv, R.; Paalme, T. (2011). Rainbow trout composition and fatty acid content in Estonia. Agronomy Research, 9 (2), 495−500.

Timberg, L.; Koppel, K.; Kuldjärv, R.; Paalme, T. (2011). Sensory and chemical properties of Baltic sprat (Sprattus sprattus balticus) and Baltic herring (Clupea harengus membras) in different catching seasons. Agronomy Research, 9 (2), 489−494.

Nahku, R.; Peebo, K.; Valgepea, K.; Barrick, J. E.; Adamberg, K.; Vilu, R. (2011). Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture. Microbiology-SGM, 157 (9), 2604−2610. 10.1099/mic.0.050658-0

Laos, K.; Kirs, E.; Pall, R.; Martverk, K. (2011). The crystallization behaviour of Estonian honeys. Agronomy Research, 9 (2), 427−432.

Kriščiunaite, T.; Stulova, I.; Kabanova, N.; Laht, T.-M.; Vilu, R. (2011). The effect of hydrogen peroxide on the growth of thermophilic lactic starter and acid gelation of UHT milk. International Dairy Journal, 21 (4), 239−246. 10.1016/j.idairyj.2010.11.012

Stulova, I.; Kabanova, N.; Kriščiunaite, T.; Laht, T.-M.; Vilu, R. (2011). The effect of milk heat treatment on the growth characteristics of lactic acid bacteria. Agronomy Research, 9 (2), 473−478.

Klesment, T.; Stekolštšikova, J.; Laos, K. (2011). The influence of hydrocolloids on storage quality of 10% dairy fat ice cream. Agronomy Research, 9 (2), 403−408.

Helmja, K.; Vaher, M.; Püssa, T.; Orav, A.; Viitak, A.; Levandi, T.; Kaljurand, M. (2011). Variation in the composition of the essential oils, phenolic compounds and mineral elements of Hypericum perforatum L. growing in Estonia. Natural Product Research, 25 (5), 496−510. 10.1080/14786411003792165


Gavrilova, O.; Vilu, R.; Vallner, L. (2010). A life cycle environmental impact assessment of oil shale produced and consumed in Estonia. Resources, Conservation Recycling, 55 (2), 232−245. 10.1016/j.resconrec.2010.09.013

Koppel, K., Chambers, E. IV (2010). Development and application of a lexicon to describe the flavor of pomegranate juice. Journal of Sensory Studies, 25 (6), 819−837. 10.1111/j.1745-459X.2010.00307.x

Sumeri, I.; Arike, L.; Stekolštšikova, J.; Uusna, R.; Adamberg, S. Adamberg, K.; Paalme, T. (2010). Effect of stress pretreatment on survival of probiotic bacteria in gastrointestinal tract simulator. Applied Microbiology and Biotechnology, 86 (6), 1925−1931. 10.1007/s00253-009-2429-2

Schmitz, A.; Thormann, W.; Moessner, L.; Theurillat, R.; Helmja, K.; Mevissen, M. (2010). Enantioselective CE analysis of hepatic ketamine metabolism in different species in vitro. Electrophoresis, 31, 1506−1516. 10.1002/elps.200900703

Nisamedtinov, I.; Kevvai, K.; Orumets, K.; Rautio, J.; Paalme, T. (2010). Glutathione accumulation in ethanol-stat fed-batch culture of Saccharomyces cerevisiae with a switch to cysteine feeding. Applied Microbiology and Biotechnology, 87 (1), 175−183. 10.1007/s00253-010-2502-x

Arike, L.; Nahku, R.; Borissova, M.; Adamberg, K.; Vilu, R. (2010). Identification and relative quantification of proteins in Escherichia coli proteome by "up-front" collision-induced dissociation. European journal of mass spectrometry, 16 (2), 227−235. 10.1255/ejms.1068

Skerget, K.; Taler-Vercic, A.; Bavdek, A.; Hodnik, V.; Ceru, S.; Tusek-Znidaric, M.; Kumm, T.; Pitsi, D.; Pompe-Novak, M.; Palumaa, P.; Soriano, S.; Kopitar-Jerala, N.; Turk, V.; Anderluh, G.; Zerovnik, E. (2010). Interaction between oligomers of stefin B and amyloid-beta in vitro and in cells. Journal of Biological Chemistry, 285 (5), 3201−3210. 10.1074/jbc.M109.024620

Stulova, I.; Adamberg, S.; Krisciunaite, T.; Kampura, M.; Blank, L.; Laht, T.-M. (2010). Microbiological quality of raw milk produced in Estonia. Letters in Applied Microbiology, 51 (6), 683−690. 10.1111/j.1472-765X.2010.02951.x

Vaher, M.; Matso, K.; Levandi, T.; Helmja, K.; Kaljurand, M. (2010). Phenolic compounds and antioxidant activity of bran, flour and whole grain of different wheat varieties. Procedia Chemistry, 2, 76−82.

Nahku, R.; Valgepea, K.; Lahtvee, P.-J.; Erm, S.; Abner, K.; Adamberg, K.; Vilu, R. (2010). Specific growth rate dependent transcriptome profiling of Escherichia coli K12 MG1655 in accelerostat cultures. Journal of Biotechnology, 145 (1), 60−65. 10.1016/j.jbiotec.2009.10.007

Valgepea, K.; Adamberg, K.; Nahku, R.; Lahtvee, P.-J.; Arike, L.; Vilu, R. (2010). Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase. BMC Systems Biology, 4, #166. 10.1186/1752-0509-4-166

Spitsmeister, M.; Adamberg, K.; Vilu, R. (2010). UPLC/MS based method for quantitative determination of fatty acid composition in Gram-negative and Gram-positive bacteria. Journal of Microbiological Methods, 82 (3), 288−295. 10.1016/j.mimet.2010.07.006


Helmja, K.; Vaher, M.; Püssa, T.; Kaljurand, M. (2009). Analysis of the stable free radical scavenging capability of artificial polyphenol mixtures and plant extracts by capillary electrophoresis and liquid chromatography-diode array detection-tandem mass spectrometry. Journal of Chromatography A, 1216 (12), 2417−2423.

Riid, A.; Preden, J.; Pahtma, R.; Serg, R.; Lints, T. (2009). Automatic Code Generation for Embedded Systems from High-Level Models. Electronics and Electrical Engineering, 95 (7), 33−36.

Enkvist, E.; Kriisa, M.; Roben, M.; Kadak, G.; Raidaru, G.; Uri, A. (2009). Effect of the structure of adenosine mimic of bisubstrate-analog inhibitors on their activity towards basophilic protein kinases. Bioorganic Medicinal Chemistry Letters, 21 (1), 6098−6101. 10.1016/j.bmcl.2009.09.026

Helmja, K.; Borissova, M.; Knjazeva, T.; Jaanus, M.; Muinasmaa, U.; Kaljurand, M.; Vaher, M. (2009). Fraction collection in capillary electrophoresis for various stand-alone mass spectrometers. Journal of Chromatography A, 1216 (17), 3666−3673.

Kabanova, N.; Kazarjan, A.; Stulova, I.; Vilu, R. (2009). Microcalorimetric study of growth of Lactococcus lactis IL1403 at different glucose concentrations in broth. Thermochimica Acta, 496 (1-2), 87−92. 10.1016/j.tca.2009.07.003

Kazantseva, A.; Sepp, M.; Kazantseva, J.; Sadam, H.; Pruunsild, P.; Timmusk, T.; Neuman, T.; Palm, K. (2009). N-terminally truncated BAF57 isoforms contribute to the diversity of SWI/SNF complexes in neurons. Journal of Neurochemistry, 109 (3), 807−818. 10.1111/j.1471-4159.2009.06005.x

Adamberg, K.; Lahtvee, P.-J.; Valgepea, K.; Abner, K.; Vilu, R. (2009). Quasi steady state growth of Lactococcus lactis in glucose-limited acceleration stat (A-stat) cultures. Antonie van Leeuwenhoek, 95 (3), 219−226. 10.1007/s10482-009-9305-z

Lahtvee, P.-J.; Valgepea, K.; Nahku, R.; Abner, K.; Adamberg, K.; Vilu, R. (2009). Steady state growth space study of Lactococcus lactis in D-stat cultures. Antonie van Leeuwenhoek, 96 (4), 487−496 . 10.1007/s10482-009-9363-2


Dugo, Paola; Herrero, Miguel; Giuffrida, Daniele; Kumm, Tiina; Dugo, Giovanni; Mondello, Luigi (2008). Application of Comprehensive Two-Dimensional Liquid Chromatography To Elucidate the Native Carotenoid Composition in Red Orange Essential Oil. Journal of Agricultural and Food Chemistry, 56 (10), 3478−3485. 10.1021/jf800144v

Dugo, Paola; Cacciola, Francesco; Kumm, Tiina; Dugo, Giovanni; Mondello, Luigi (2008). Comprehensive multidimensional liquid chromatography: Theory and applications. Journal of Chromatography A, 1184 (1-2), 353−368. 10.1016/j.chroma.2007.06.074

Dugo, Paola; Herrero, Miguel; Kumm, Tiina; Giuffrida, Daniele; Dugo, Giovanni; Mondello, Luigi (2008). Comprehensive normal-phase x reversed-phase liquid chromatography coupled to photodiode array and mass spectrometry detectors for the analysis of free carotenoids and carotenoid esters from mandarin. Journal of Chromatography A, 1189, 196−206.

Helmja, K.; Vaher, M.; Püssa, T.; Raudsepp, P.; Kaljurand, M. (2008). Evaluation of antioxidative capability of the tomato (Solanum lycopersicum) skin constituents by capillary electrophoresis and high-perfoemance liquid chromatography. Electrophoresis, 3980−3988.

Mondello, Luigi; Herrero, Miguel; Kumm, Tiina; Dugo, Paola; Cortes, Hernan; Dugo, Giovanni (2008). Quantification in Comprehensive Two-Dimensional Liquid Chromatography. Analytical Chemistry, 80 (14), 5418−5424. 10.1021/ac800484y

Sumeri, I.; Arike, L.; Adamberg, K.; Paalme, T. (2008). Single bioreactor gastrointestinal tract simulator for study of survival of probiotic bacteria. Applied Microbiology and Biotechnology, 80 (2), 317−324. 10.1007/s00253-008-1553-8

Nisamedtinov, I.; Lindsey, G. G.; Karreman, R.; Orumets, K.; Koplimaa, M.; Kevvai, K.; Paalme, T. (2008). The response of the yeast Saccharomyces cerevisiae to sudden vs. gradual changes in environmental stress monitored by expression of the stress response protein Hsp12p. FEMS Yeast Research, 8 (6), 829−838. 10.1111/j.1567-1364.2008.00391.x

Dugo, P.; Kumm, T.; Cacciola, F.; Dugo, G.; Mondello, L. (2008). Multidimensional Liquid Chromatographic Separations Applied to the Analysis of Food Samples. Journal of Liquid Chromatography Related Technologies, 31, 1758−1807. 10.1080/10826070802128888


Helmja, K.; Vaher, M.; Püssa, T.; Kamsol, K.; Orav, A.; Kaljurand, M. (2007). Bioactive components of the hop strobilus: Comparison of different extraction methods by capillary electrophoretic and chromatographic methods. Journal of Chromatography A, 1155 (2), 222−229.

Voronova, A.; Kazantseva, J.; Tuuling, M.; Sokolova, N.; Sillard, R.;L Palumaa, P. (2007). Cox17, a copper chaperone for cytochrome c oxidase: Expression, purification and formation of mixed disulfide adducts with thiol reagents. Protein Expression and Purification, 53 (1), 138−144. 10.1016/j.pep.2006.11.014

Kasemets K., Nisamedtinov I., Laht T.-M.,Abner K., Paalme T. (2007). Growth characteristics of Saccharomyces cerevisiae S288C in changing environmental conditions: auxo-accelerostat study. Antonie van Leeuwenhoek, 92 (1), 109−128. 10.1007/s10482-007-9141-y

Voronova, A.; Meyer-Klaucke, W.; Meyer, T.; Rompel, A.; Krebs, B.; Kazantseva, J.; Sillard, R.; Palumaa, P. (2007). Oxidative switches in functioning of mammalian copper chaperone Cox17. Biochemical Journal, 408 (1), 139−148. 10.1042/BJ20070804


Paalme, Toomas; Nisamedtinov, Ildar; Abner, Kristo; Laht, Tiiu-Maie; Drews, Monika; Pehk, Tõnis (2006). Application of 13C-[2]- and 13C-[1,2] acetate in metabolic labelling studies of yeast and insect cells. Antonie van Leeuwenhoek, 89, 443−457. 10.1007/s10482-005-9053-7

Sarmiento, C.; Nigul, L.; Kazantseva, J.; Buschmann, M.; Truve, E. (2006). AtRLI2 is an endogenous suppressor of RNA silencing. Plant Molecular Biology, 61, 153−163. 10.1007/s11103-005-0001-8

Dugo, P.; Kumm, T.; Crupi, M.L.; Cotroneo, A.; Mondello, L. (2006). Comprehensive Two-Dimensional Liquid Chromatography Combined with Mass Spectrometric Detection in the Analyses of Triacylglycerols in Natural Lipidic Matrices. Journal of Chromatography A, 1112, 269−275.

Dugo, Paola; Kumm, Tiina; Fazio, Alessia; Dugo, Giovanni; Mondello, Luigi (2006). Determination of beef tallow in lard through a multidimensional off-line Non Aqueous Reversed Phase/Argentation LC method coupled to Mass Spectrometry. Journal of Separation Science, 29, 567−575.

Dugo, Paola; Škeříková, Veronika; Kumm, Tiina; Trozzi, Alessandra; Jandera, Pavel; Mondello, Luigi (2006). Elucidation of carotenoid patterns in citrus products by means of comprehensive normal phase x reversed phase liquid cromatography. Analytical Chemistry, 78 (22), 7743−7750. 10.1021/ac061290q

Tahkoniemi, H.; Helmja, K.; Menert, A.; Kaljurand, M. (2006). Fermentation reactor coupled with capillary electropherophoresis for on-line bioprocess monitoring. Journal of Pharmaceutical and Biomedical Analysis, 41 (5), 1585−1591. 10.1016/j.jpba.2006.01.042

Meloni, G.; Zovo, K.; Kazantseva, J.; Palumaa, P.; Vasak, M. (2006). Organization and assembly of metal-thiolate clusters in epithelium-specific metallothionein-4. Journal of Biological Chemistry, 281 (21), 14588−14595. 10.1074/jbc.M601724200

Dugo, Paola; Kumm, Tiina; Chiofalo, Biagina; Cotroneo, Antonella; Mondello, Luigi (2006). Separation of triacylglycerols in a complex lipidic matrix by using comprehensive two-dimensional liquid chromatography coupled with atmospheric pressure chemical ionization mass spectrometric detection. Journal of Separation Science, 29 (8), 1146−1154. 10.1002/jssc.200500476

Adamberg, K.; Adamberg, S.; Laht, T.-M.; Ardö, Y.; Paalme, T. (2006). Study of Cheese Associated Lactic Acid Bacteria under Carbohydrate-Limited Conditions Using D-stat Cultivation. Food Biotechnology, 20 (2), 143−160. 10.1080/08905430600709412


Dugo, Paola; Kumm, Tiina; Lo Presti, Maria; Chiofalo, Biagina; Salimei, Elisabetta; Fazio, Alessia; Cotroneo, Antonella; Mondello, Luigi. (2005). Determination of triacylglycerols in donkey milk by using high performance liquid chromatography coupled with atmospheric pressure chemical ionization mass spectrometry. Journal of Separation Science, 28, 1023−1030.

Kilk, K.; El-Andaloussi, S.; Jarver, P.; Meikas, A.; Valkna, A.; Bartfai, T.; Kogerman, P.; Metsis, M.; Langel, U. (2005). Evaluation of transportan 10 in PEI mediated plasmid delivery assay. Journal of Controlled Release, 103 (2), 511−523. 10.1016/j.jconrel.2004.12.006

Adamberg, K.; Antonsson, M.; Vogensen, FK.; Nielsen, EW.; Kask, S.; Moller, PL.; Ardo, Y (2005). Fermentation of carbohydrates from cheese sources by non-starter lactic acid bacteria isolated from semi-hard Danish cheese. International Dairy Journal, 15, 873−882.


Menert, A.; Paalme, V.; Juhkam, J.; Vilu, R (2004). Characterization of sulfate-reducing bacteria in yeast industry waste by microcalorimetry and PCR amplification. Thermochimica Acta, 420, 89−98. 10.1016/j.tca.2003.12.032

Orav, Anne.; Stulova, Irina.; Kailas, Tiiu.; Müürisepp, Mati (2004). Effect of storage on the essential oil composition of Piper nigrum L. fruits of different ripening states. Journal of Agricultural and Food Chemistry, 52 (9), 2582−2586.


Kasemets, K.; Drews, M.; Nisamedtinov, I.; Adamberg, K.; Paalme, T (2003). Modification of A-stat for the characterization of microorganisms. Journal of Microbiological Methods, 55 (1), 187−200.

Kask, S.; Adamberg, K.; Orlowski, A.; Vogensen, FK.; Moller, PL.; Ardo, Y.; Paalme, T (2003). Physiological properties of Lactobacillus paracasei, L. Danicus and L-curvatus strains isolated from Estonian semi-hard cheese. Food Research international, 36, 1037−1046.

Adamberg, K.; Kask, S.; Laht, TM.; Paalme, T (2003). The effect of temperature and ph on the growth of lactic acid bacteria: a ph-auxostat study. International Journal of Food Microbiology, 85, 171−183.

Blonskaja, V.; Menert, A.; Vilu, R (2003). Use of two-stage anaerobic treatment for distillery waste. Advances in Environmental Research, 7 (3), 671−678.


Kulp, Maria; Vassiljeva, Irina; Vilu, Raivo; Kaljurand, Mihkel (2002). Monitoring of the degradation of phenols by Rhodococcus bacteria by using micellar electrokinetic chromatography. Journal of Separation Science, 25, 1129−1135.

Laht, Tiiu-Maie; Kask, Signe; Elias, Priit; Adamberg, Kaarel; Paalme, Toomas (2002). Role of Arginine in the Development of Secondary Microflora in Swiss-Type Cheese. International Dairy Journal, 12 (10), 831−840.


Menert, A.; Liiders, M.; Kurissoo, T.; Vilu, R (2001). Microcalorimetric monitoring of anaerobic digestion processes. Journal of Thermal Analysis and Calorimetry, 64 (1), 281−291.

Ehala, S.; Vassiljeva, I.; Kuldvee, R.; Vilu, R.; Kaljurand, M (2001). On-line coupling of a miniaturized bioreactor with capillary electrophoresis, via a membrane interface, for monitoring the production of organic acids by microorganisms. Fresenius Journal of Analytical Chemistry, 371 (2), 168−173.


Chen, J.; Dagher, SM.; Fisher, CE.; Grunow, W.; Hattan, DG.; Kawamura, Y.; Knaap, AGAC.; Kuznesof, PM.; Larsen, JC.; Meyland, I.; Pascal, G.; Riordan, M.; Walker, R.; Wilson, JD.; Akkelidou, D.; Bellinger, DC.; Bolger, M.; Carrington, C.; Dewailly, E.; DiNovi, M., Eriksen, GS.; Greig, J.; Hecker, EFF.; Herrman, JL.; Hotchkiss, JH.; Madsen, C.; Magos, LPA.; Mattia, A.; Moy, G.; Munro, IC.; Nishikawa, A.; Pennington, JA.; Petersen, B.; Renwick, AG.; Resnik, S.; Schlatter, J.; Sipes, GI.; Speijers, GJA.; Vavasour, E.; Verger, JP.; Vilu, R.; Wallin, H.; Weatherwax, J.; Whitehouse, DB (2000). Evaluation of certain food additives and contaminants. Evaluation of Certain Food Additives and Contaminants, 53rd Report, 896, 1−128.


Rozkov, A.; Vassiljeva, I.; Kurvet, M.; Kahru, A.; Preis, S.; Kharchenko, A.; Krichevskaya, M.; Liiv, M.; Kaard, A.; Vilu, R (1999). Laboratory study of bioremediation of rocket fuel-polluted groundwater. Water Research, 33 (5), 1303−1313.


Kallastu, A.; Hõrak, R.; Kivisaar, M. (1998). Identification and characterization of IS1411, a new insertion sequence which causes transcriptional activation of the phenol degradation genes in Pseudomonas putida. Journal of Bacteriology, 180 (20), 5306−5312.


Rozkov, A.; Kaard, A.; Vilu, R (1997). Biodegradation of dissolved jet fuel in chemostat by a mixed bacterial culture isolated from a heavily polluted site. Biodegradation, 8 (6), 363−369.

Gudima, S.O.; Kazantseva, E.G.; Kostjuk, D.A. (1997). Deoxynucleotide-containing RNAs: a novel class of templates for HIV-I reverse transcriptase. Nucleic Acids Research, 25 (22), 4614−4618.

Paalme, T.; Elken, R.; Vilu, R.; Korhola, M. (1997). Growth efficiency of Saccharomyces cerevisiae on glucose/ethanol media with a smooth change in the dilution rate (A-stat). Enzyme and Microbial Technology, 20 (3), 174−181.

Paalme, T.; Elken, R.; Kahru, A.; Vanatalu, K.; Vilu, R. (1997). The growth rate control in Escherichia coli at near to maximum growth rates: the A-stat approach. Antonie van Leeuwenhoek, 71 (3), 217−230.


Paalme, T.; Kahru, A.; Elken, R.; Vanatalu, K.;Tiisma, K.; Vilu, R. (1995). The Computer- Controlled Continuous Culture of Escherichia coli with Smooth Change of Dilution rate. A-stat. Journal of Microbiological Methods, 24, 145−153.

Drews, M.; Paalme, T.; Vilu, R. (1995). The growth and nutrient utilization of the insect cell line Spodoptera frugiperda Sf9 cells in batch and continuous culture. Journal of Biotechnology, 40 (3), 187−198.


Vanatalu, K.; Paalme, T.; Vilu, R.; Burkhardt, N.; Junemann, R.; May, R.; Ruhl, M.; Wadzack, J.; Nierhaus, K.H. (1993). Large-scale preparation of fully deuterated cell components - ribosomes from Escherichis coli with high biological activity. European Journal of Biochemistry, 216 (1), 315−321.

Sarand, I.; Mae, A.; Vilu, R.; Heinaru, A. (1993). New derivatives of tol plasmid pww0. Journal of General Microbiology, 139, 2379−2385.


Paalme, T.; Tiisma, K.; Kahru, A.; Vanatalu, K; Vilu, R. (1990). Glucose-limited fed-batch cultivation of Escherichia coli with computer-controlled fixed growth rate. Biotechnology and Bioengineering, 35, 312−319.

Kahru, A.; Vilu, R. (1990). The role of the adenine nucleotides in the regulation of bacterial energy metabolism: theoretical problems and experimental pitfalls. Microbios. 62, 83−92.


Schafer, S.; Paalme, T.; Vilu, R.; Fuchs, G. (1989). C-13-NMR STUDY OF ACETATE ASSIMILATION IN THERMOPROTEUS-NEUTROPHILUS. European Journal of Biochemistry, 186 (3), 695−700.


Kahru, A.; Vilu, R. (1988). Use of the luciferin-luciferase assay of ATP for measuring the bacterial growth: application to Escherichia coli. Acta Biotechnologica, 8, 93−98.


Kahru, A.; Paalme, T.; Vilu, R. (1987). Effect of temperature on the ATP pool and adenylate energy charge of Escherichia coli. FEMS Microbiology Letters, 41 (3), 305−308.


Kahru, A.; Vilu, R. (1983). On characterization of the growth of Escherichia coli in batch culture. Archives of Microbiology, 135 (1), 12−15.


Kahru, A.; Liiders, M.; Vanatalu, K.; Vilu, R. (1982). Adenylate energy charge during batch culture of Thermoactinomyces vulgaris. Archives of Microbiology, 133 (2), 142−144.

Paalme, T.; Olivson, A.; Vilu, R. (1982). C-13-NMR Study of CO2-Fixation During the Heterotrophic Growth in Chlorobium-thiosulfatophilum. Biochimica et Biophysica Acta, 720 (3), 311−319.

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